Human Gene CPOX (ENST00000647941.2_7) from GENCODE V47lift37
  Description: coproporphyrinogen oxidase (from RefSeq NM_000097.7)
Gencode Transcript: ENST00000647941.2_7
Gencode Gene: ENSG00000080819.9_12
Transcript (Including UTRs)
   Position: hg19 chr3:98,298,290-98,312,455 Size: 14,166 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr3:98,299,527-98,312,348 Size: 12,822 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:98,298,290-98,312,455)mRNA (may differ from genome)Protein (454 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HEM6_HUMAN
DESCRIPTION: RecName: Full=Coproporphyrinogen-III oxidase, mitochondrial; Short=COX; Short=Coprogen oxidase; Short=Coproporphyrinogenase; EC=1.3.3.3; Flags: Precursor;
FUNCTION: Key enzyme in heme biosynthesis. Catalyzes the oxidative decarboxylation of propionic acid side chains of rings A and B of coproporphyrinogen III.
CATALYTIC ACTIVITY: Coproporphyrinogen-III + O(2) + 2 H(+) = protoporphyrinogen-IX + 2 CO(2) + 2 H(2)O.
PATHWAY: Porphyrin metabolism; protoporphyrin-IX biosynthesis; protoporphyrinogen-IX from coproporphyrinogen-III (O2 route): step 1/1.
SUBUNIT: Homodimer.
SUBCELLULAR LOCATION: Mitochondrion intermembrane space.
DISEASE: Defects in CPOX are the cause of hereditary coproporphyria (HCP) [MIM:121300]. HCP is an acute hepatic porphyria and an autosomal dominant disease characterized by neuropsychiatric disturbances and skin photosensitivity. Biochemically, there is an overexcretion of coproporphyrin III in the urine and in the feces. HCP is clinically characterized by attacks of abdominal pain, neurological disturbances, and psychiatric symptoms. The symptoms are generally manifested with rapid onset, and can be precipitated by drugs, alcohol, caloric deprivation, infection, endocrine factors or stress. A severe variant form is harderoporphyria, which is characterized by earlier onset attacks, massive excretion of harderoporphyrin in the feces, and a marked decrease of coproporphyrinogen IX oxidase activity.
SIMILARITY: Belongs to the aerobic coproporphyrinogen-III oxidase family.
SEQUENCE CAUTION: Sequence=BAA04033.1; Type=Erroneous initiation;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/CPOX";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CPOX
Diseases sorted by gene-association score: coproporphyria* (1744), porphyria cutanea tarda (20), porphyria (18), porphyria variegata (16), protoporphyria, erythropoietic, autosomal recessive (14), porphyria, acute intermittent (12), acute porphyria (8), porphyria, congenital erythropoietic (6), myoclonic epilepsy associated with ragged-red fibers (4), mitochondrial disorders (4), leigh syndrome (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -41.90107-0.392 Picture PostScript Text
3' UTR -308.001237-0.249 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001260 - Coprogen_oxidase_aer
IPR018375 - Coprogen_oxidase_CS

Pfam Domains:
PF01218 - Coproporphyrinogen III oxidase

SCOP Domains:
102886 - Coproporphyrinogen III oxidase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2AEX - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P36551
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
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 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004109 coproporphyrinogen oxidase activity
GO:0005212 structural constituent of eye lens
GO:0016491 oxidoreductase activity
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity

Biological Process:
GO:0006779 porphyrin-containing compound biosynthetic process
GO:0006782 protoporphyrinogen IX biosynthetic process
GO:0006783 heme biosynthetic process
GO:0010035 response to inorganic substance
GO:0010039 response to iron ion
GO:0010288 response to lead ion
GO:0017085 response to insecticide
GO:0046685 response to arsenic-containing substance
GO:0051597 response to methylmercury
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005758 mitochondrial intermembrane space
GO:0005829 cytosol
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  BC023551 - Homo sapiens coproporphyrinogen oxidase, mRNA (cDNA clone MGC:19660 IMAGE:3161428), complete cds.
Z28409 - H.sapiens coprox gene for coproporphyrinogen oxidase.
BC023554 - Homo sapiens coproporphyrinogen oxidase, mRNA (cDNA clone MGC:19736 IMAGE:3607724), complete cds.
BC017210 - Homo sapiens coproporphyrinogen oxidase, mRNA (cDNA clone MGC:10533 IMAGE:3956896), complete cds.
D16611 - Homo sapiens mRNA for coproporphyrinogen oxidase, complete cds.
AK223481 - Homo sapiens mRNA for coproporphyrinogen oxidase variant, clone: FCC119C06.
AK290140 - Homo sapiens cDNA FLJ76234 complete cds, highly similar to Homo sapiens coproporphyrinogen oxidase (CPOX), mRNA.
KJ896639 - Synthetic construct Homo sapiens clone ccsbBroadEn_06033 CPOX gene, encodes complete protein.
KJ905181 - Synthetic construct Homo sapiens clone ccsbBroadEn_14594 CPOX gene, encodes complete protein.
BX648974 - Homo sapiens mRNA; cDNA DKFZp779B0713 (from clone DKFZp779B0713).
JD480005 - Sequence 461029 from Patent EP1572962.
JD237208 - Sequence 218232 from Patent EP1572962.
JD082777 - Sequence 63801 from Patent EP1572962.
JD168290 - Sequence 149314 from Patent EP1572962.
JD482406 - Sequence 463430 from Patent EP1572962.
JD072803 - Sequence 53827 from Patent EP1572962.
JD504547 - Sequence 485571 from Patent EP1572962.
JD250335 - Sequence 231359 from Patent EP1572962.
JD297301 - Sequence 278325 from Patent EP1572962.
JD203063 - Sequence 184087 from Patent EP1572962.
JD241529 - Sequence 222553 from Patent EP1572962.
JD381705 - Sequence 362729 from Patent EP1572962.
JD415863 - Sequence 396887 from Patent EP1572962.
JD162320 - Sequence 143344 from Patent EP1572962.
AK299692 - Homo sapiens cDNA FLJ56733 complete cds, highly similar to Coproporphyrinogen III oxidase, mitochondrial precursor (EC 1.3.3.3).
JD423571 - Sequence 404595 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
HEME-BIOSYNTHESIS-II - heme biosynthesis from uroporphyrinogen-III I
PWY-5920 - heme biosynthesis

BioCarta from NCI Cancer Genome Anatomy Project
h_ahspPathway - Hemoglobin's Chaperone

Reactome (by CSHL, EBI, and GO)

Protein P36551 (Reactome details) participates in the following event(s):

R-HSA-189421 CPO transforms COPRO3 to PPGEN9
R-HSA-189451 Heme biosynthesis
R-HSA-189445 Metabolism of porphyrins
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8K275, B4DSD5, CPO, CPOX , CPX, ENST00000647941.1, HEM6_HUMAN, NM_000097, P36551, Q14060, Q53F08, Q8IZ45, Q96AF3, uc328odn.1, uc328odn.2
UCSC ID: ENST00000647941.2_7
RefSeq Accession: NM_000097.7
Protein: P36551 (aka HEM6_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene CPOX:
hcp (Hereditary Coproporphyria)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.