Human Gene CREB3 (ENST00000353704.3_5) from GENCODE V47lift37
  Description: cAMP responsive element binding protein 3 (from RefSeq NM_006368.5)
Gencode Transcript: ENST00000353704.3_5
Gencode Gene: ENSG00000107175.12_8
Transcript (Including UTRs)
   Position: hg19 chr9:35,732,663-35,736,996 Size: 4,334 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr9:35,732,770-35,736,723 Size: 3,954 Coding Exon Count: 9 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:35,732,663-35,736,996)mRNA (may differ from genome)Protein (371 aa)
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-  Comments and Description Text from UniProtKB
  ID: CREB3_HUMAN
DESCRIPTION: RecName: Full=Cyclic AMP-responsive element-binding protein 3; Short=CREB-3; Short=cAMP-responsive element-binding protein 3; AltName: Full=Leucin zipper proitein; AltName: Full=Luman; AltName: Full=Transcription factor LZIP-alpha; Contains: RecName: Full=Processed cyclic AMP-responsive element-binding protein 3; Short=N-terminal Luman; Short=Transcriptionally active form;
FUNCTION: Endoplasmic reticulum (ER)-bound transcription factor that plays a role in the unfolded protein response (UPR). Involved in cell proliferation and migration, tumor suppression and inflammatory gene expression. Plays also a role in the human immunodeficiency virus type 1 (HIV-1) virus protein expression and in the herpes simplex virus-1 (HSV-1) latent infection and reactivation from latency. Isoform 2 plays a role in the unfolded protein response (UPR). Isoform 2 acts as a positive regulator of LKN-1/CCL15-induced chemotaxis signaling of leukocyte cell migration. Isoform 2 may play a role as a cellular tumor suppressor that is targeted by the hepatitis C virus (HSV) core protein. Isoform 2 represses the VP16-mediated transactivation of immediate early genes of the HSV-1 virus by sequestring host cell factor-1 HCFC1 in the ER membrane of sensory neurons, thereby preventing the initiation of the replicative cascade leading to latent infection. Isoform 3 functions as a negative transcriptional regulator in ligand-induced transcriptional activation of the glucocorticoid receptor NR3C1 by recruiting and activating histone deacetylases (HDAC1, HDAC2 and HDAC6). Isoform 3 decreases the acetylation level of histone H4. Isoform 3 does not promote the chemotactic activity of leukocyte cells.
FUNCTION: Processed cyclic AMP-responsive element-binding protein 3: acts as a transcription factor that activates unfolded protein response (UPR) target genes during endoplasmic reticulum (ER) stress response. Promotes cell survival against ER stress-induced apoptotic cell death during UPR. Activates transcription from CRE and C/EBP-containing reporter genes. Induces transcriptional activation of chemokine receptors. Activates transcription of genes required for reactivation of the latent HSV-1 virus. Down- regulates Tat-dependent transcription of the HIV-1 LTR by interacting with HIV-1 Tat. It's transcriptional activity is inhibited by CREBZF in a HCFC1-dependent manner, by the viral transactivator protein VP16 and by the HCV core protein. Binds DNA to the cAMP response element (CRE) (consensus: 5'-GTGACGT[AG][AG]- 3') and C/EBP sequences present in many viral and cellular promoters. Binds to the unfolded protein respons element (UPRE) consensus sequences sites. Binds DNA to the 5'-CCAC[GA]-3'half of ERSE II (5'-ATTGG-N-CCACG-3'). Associates with chromatin to the HERPUD1 promoter.
SUBUNIT: Homodimer; homodimerization is prevented by the HCV core protein. Interacts with HCFC1; the interaction is required to stimulate CREB3 transcriptional activity. Isoform 2 interacts with CREBZF; the interaction occurs only in combination with HCFC1. Isoform 2 interacts (via central part and transmembrane region) with TM7SF4 (via C-terminus cytoplasmic domain). Isoform 2 interacts with OS9. Isoform 2 interacts (via leucine-zipper domain) with CREBRF (via leucine-zipper domain); the interaction occurs only after CREB3 activation and promotes CREB3 degradation. Isoform 2 interacts (via C-terminal domain) with CCR1. Isoform 2 interacts (via leucine-zipper and transmembrane domains) with HIV- 1 ENV (via cytoplasmic domain). Isoform 2 interacts (via leucine- zipper and transmembrane domains) with HIV-1 TMgp41 (via cytoplasmic domain); the interaction reduces CREB3 stability. Interacts with the HCV core protein. Processed cyclic AMP- responsive element-binding protein 3 interacts with HIV-1 Tat.
INTERACTION: P29846:- (xeno); NbExp=8; IntAct=EBI-625022, EBI-909718; P32246:CCR1; NbExp=7; IntAct=EBI-625022, EBI-608322; Q8IUR6:CREBRF; NbExp=4; IntAct=EBI-625022, EBI-1042699; Q9H295:DCSTAMP; NbExp=6; IntAct=EBI-625022, EBI-6095316; P51610:HCFC1; NbExp=5; IntAct=EBI-625002, EBI-396176; P05412:JUN; NbExp=4; IntAct=EBI-625002, EBI-852823;
SUBCELLULAR LOCATION: Isoform 2: Endoplasmic reticulum membrane; Single-pass type II membrane protein. Membrane. Note=Colocalizes with HCFC1 in neuronal cell bodies of the trigeminal ganglia (By similarity). Colocalizes with TM7SF4 in the ER membrane of immature dendritic cell (DC). Colocalizes with CANX, CCR1, HCFC1 in the ER membrane. Sequestred into the cytoplasm by the HCV core protein.
SUBCELLULAR LOCATION: Isoform 3: Nucleus. Cytoplasm. Note=Predominantly in the nucleus.
SUBCELLULAR LOCATION: Processed cyclic AMP-responsive element- binding protein 3: Nucleus. Note=Upon RIP activation the transcriptional active processed cyclic AMP-responsive element- binding protein 3 form translocates into the nucleus. Detected in the nucleus upon dendritic cell maturation and RIP activation. Colocalizes with CREBRF in nuclear foci. Colocalizes with CREBZF in promyelocytic leukemia protein nuclear bodies (PML-NB).
TISSUE SPECIFICITY: Expressed in dendritic cells (DC). Weakly expressed in monocytes (at protein level). Ubiquitous.
INDUCTION: Up-regulated upon differentiation of monocytes towards immature dendritic cells (DC). Down-regulated upon DC maturation. Up-regulated by endoplasmic reticulum stress triggered by thapsigargin (Tg) or tunicamycin (Tm). Up-regulated by CCR1- dependent chemokines in an immediate early response and biphasic manner and by NF-kappa-B.
PTM: The ER membrane embedded cyclic AMP-responsive element- binding protein 3 form is first proteolytically cleaved by site-1 protease (S1P) that generates membrane-associated N-terminus and a luminal C-terminus forms. The membrane-associated N-terminus form is further proteolytically processed probably by the site-2 protease (S2P) through a regulated intramembrane proteolysis (RIP), releasing the transcriptional active processed cyclic AMP- responsive element-binding protein 3 form, which is transported to the nucleus. The proteolytic cleavage is strongly induced during dendritic cell (DC) maturation and inhibited by TM7SF4.
PTM: The processed cyclic AMP-responsive element-binding protein 3 is rapidly degraded.
PTM: N-glycosylated.
SIMILARITY: Belongs to the bZIP family. ATF subfamily.
SIMILARITY: Contains 1 bZIP (basic-leucine zipper) domain.
CAUTION: All experiments concerning the proteolytic cleavage are done with isoform 2.

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: CREB3
Diseases sorted by gene-association score: herpes simplex (12), hiv-1 (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 75.95 RPKM in Testis
Total median expression: 1811.86 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -54.10107-0.506 Picture PostScript Text
3' UTR -94.00273-0.344 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004827 - bZIP
IPR008917 - Euk_TF_DNA-bd

Pfam Domains:
PF00170 - bZIP transcription factor
PF07716 - Basic region leucine zipper

SCOP Domains:
47454 - A DNA-binding domain in eukaryotic transcription factors
57959 - Leucine zipper domain

ModBase Predicted Comparative 3D Structure on O43889
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008140 cAMP response element binding protein binding
GO:0031726 CCR1 chemokine receptor binding
GO:0035497 cAMP response element binding
GO:0042803 protein homodimerization activity
GO:0046983 protein dimerization activity

Biological Process:
GO:0001558 regulation of cell growth
GO:0002230 positive regulation of defense response to virus by host
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0006935 chemotaxis
GO:0006986 response to unfolded protein
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response
GO:0016032 viral process
GO:0019043 establishment of viral latency
GO:0019046 release from viral latency
GO:0030335 positive regulation of cell migration
GO:0030968 endoplasmic reticulum unfolded protein response
GO:0034976 response to endoplasmic reticulum stress
GO:0042127 regulation of cell proliferation
GO:0042981 regulation of apoptotic process
GO:0042994 cytoplasmic sequestering of transcription factor
GO:0045786 negative regulation of cell cycle
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0050930 induction of positive chemotaxis
GO:0051928 positive regulation of calcium ion transport
GO:0090026 positive regulation of monocyte chemotaxis
GO:0090045 positive regulation of deacetylase activity
GO:1902236 negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:2000326 negative regulation of ligand-dependent nuclear receptor transcription coactivator activity

Cellular Component:
GO:0000139 Golgi membrane
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016604 nuclear body
GO:0030176 integral component of endoplasmic reticulum membrane
GO:0043025 neuronal cell body


-  Descriptions from all associated GenBank mRNAs
  AF211848 - Homo sapiens cAMP responsive element binding protein 3 (CREB3) mRNA, complete cds.
AF029674 - Homo sapiens basic leucine zipper protein LZIP (LZIP) mRNA, complete cds.
U88528 - Human transcription factor LZIP mRNA, complete cds.
AK313635 - Homo sapiens cDNA, FLJ94206, highly similar to Homo sapiens cAMP responsive element binding protein 3 (luman)(CREB3), mRNA.
AK299781 - Homo sapiens cDNA FLJ57143 complete cds, highly similar to Cyclic AMP-responsive element-binding protein 3.
BC009402 - Homo sapiens cAMP responsive element binding protein 3, mRNA (cDNA clone MGC:15333 IMAGE:4300366), complete cds.
BC010158 - Homo sapiens cAMP responsive element binding protein 3, mRNA (cDNA clone MGC:19782 IMAGE:3829968), complete cds.
JD391704 - Sequence 372728 from Patent EP1572962.
AF009368 - Homo sapiens Luman mRNA, complete cds.
CU679643 - Synthetic construct Homo sapiens gateway clone IMAGE:100017118 5' read CREB3 mRNA.
AB463457 - Synthetic construct DNA, clone: pF1KB7654, Homo sapiens CREB3 gene for cAMP responsive element binding protein 3, without stop codon, in Flexi system.
FJ263669 - Homo sapiens leucine zipper protein isoform (CREB3) mRNA, partial cds, alternatively spliced.
EU446868 - Synthetic construct Homo sapiens clone IMAGE:100070249; IMAGE:100012077; FLH258196.01L cAMP responsive element binding protein 3 (CREB3) gene, encodes complete protein.
KJ893061 - Synthetic construct Homo sapiens clone ccsbBroadEn_02455 CREB3 gene, encodes complete protein.
KJ898227 - Synthetic construct Homo sapiens clone ccsbBroadEn_07621 CREB3 gene, encodes complete protein.
JD038619 - Sequence 19643 from Patent EP1572962.
CQ873744 - Sequence 163 from Patent WO2004076622.
DD413581 - Regulation of Mammalian Cells.
JD053301 - Sequence 34325 from Patent EP1572962.
JD404808 - Sequence 385832 from Patent EP1572962.
JD040246 - Sequence 21270 from Patent EP1572962.
JD221578 - Sequence 202602 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O43889 (Reactome details) participates in the following event(s):

R-HSA-8874204 MBTPS1 (S1P) cleaves CREB3
R-HSA-8874192 MBTPS2 (S2P) cleaves CREB3
R-HSA-8874849 CREBRF binds CREB3
R-HSA-8874211 CREB3 factors activate genes
R-HSA-381119 Unfolded Protein Response (UPR)
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: CREB3_HUMAN, D0PTW6, ENST00000353704.1, ENST00000353704.2, LZIP, NM_006368, O14671, O14919, O43889, Q5TCV1, Q96GK8, Q9H2W3, Q9UE77, uc317ykt.1, uc317ykt.2
UCSC ID: ENST00000353704.3_5
RefSeq Accession: NM_006368.5
Protein: O43889 (aka CREB3_HUMAN or CRE3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.