Human Gene CREB3L3 (ENST00000078445.7_7) from GENCODE V47lift37
  Description: cAMP responsive element binding protein 3 like 3, transcript variant 1 (from RefSeq NM_032607.3)
Gencode Transcript: ENST00000078445.7_7
Gencode Gene: ENSG00000060566.14_10
Transcript (Including UTRs)
   Position: hg19 chr19:4,153,628-4,173,051 Size: 19,424 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr19:4,153,745-4,171,966 Size: 18,222 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:4,153,628-4,173,051)mRNA (may differ from genome)Protein (461 aa)
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UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CR3L3_HUMAN
DESCRIPTION: RecName: Full=Cyclic AMP-responsive element-binding protein 3-like protein 3; Short=cAMP-responsive element-binding protein 3-like protein 3; AltName: Full=Transcription factor CREB-H; Contains: RecName: Full=Processed cyclic AMP-responsive element-binding protein 3-like protein 3;
FUNCTION: Transcription factor that may act during endoplasmic reticulum stress by activating unfolded protein response target genes. Activated in response to cAMP stimulation. In vitro, binds to the cAMP response element (CRE) and box-B element. Activates transcription through box-B element. Activates transcription through CRE (By similarity). Seems to function synergistically with ATF6. In acute inflammatory response, may activate expression of acute phase response (APR) genes. May be involved in growth suppression.
SUBUNIT: Binds DNA as a dimer (By similarity). Probably homodimerizes. Probably forms a heterodimer with ATF6. Interacts with ATF6.
INTERACTION: P18850:ATF6; NbExp=2; IntAct=EBI-852194, EBI-852157;
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass type II membrane protein.
SUBCELLULAR LOCATION: Processed cyclic AMP-responsive element- binding protein 3-like protein 3: Nucleus. Note=Under ER stress the cleaved N-terminal cytoplasmic domain translocates into the nucleus.
TISSUE SPECIFICITY: Exclusively expressed in liver. Underexpressed in hepatocellular carcinoma tissues.
PTM: Controlled by regulated intramembrane proteolysis (RIP). Following ER stress a fragment containing the cytoplasmic transcription factor domain is released by proteolysis. The cleavage seems to be performed sequentially by site-1 and site-2 proteases (PS1 and PS2).
PTM: N- and O-glycosylated. N-glycosylation is required for optimal proteolytic activation. O-glycosylated with core 1 or possibly core 8 glycans.
SIMILARITY: Belongs to the bZIP family. ATF subfamily.
SIMILARITY: Contains 1 bZIP (basic-leucine zipper) domain.
SEQUENCE CAUTION: Sequence=BAD18804.1; Type=Frameshift; Positions=445; Sequence=BAD18804.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CREB3L3
Diseases sorted by gene-association score: hyperchylomicronemia, late-onset* (247), hepatocellular carcinoma (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 205.70 RPKM in Liver
Total median expression: 275.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -51.40117-0.439 Picture PostScript Text
3' UTR -239.201085-0.220 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004827 - bZIP
IPR008917 - Euk_TF_DNA-bd

Pfam Domains:
PF00170 - bZIP transcription factor
PF07716 - Basic region leucine zipper

SCOP Domains:
47454 - A DNA-binding domain in eukaryotic transcription factors
57959 - Leucine zipper domain

ModBase Predicted Comparative 3D Structure on Q68CJ9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000976 transcription regulatory region sequence-specific DNA binding
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0035497 cAMP response element binding
GO:0042803 protein homodimerization activity
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0002675 positive regulation of acute inflammatory response
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0006986 response to unfolded protein
GO:0030968 endoplasmic reticulum unfolded protein response
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:1990440 positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress

Cellular Component:
GO:0000139 Golgi membrane
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005829 cytosol
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK313099 - Homo sapiens cDNA, FLJ93584, Homo sapiens cAMP responsive element binding protein 3-like 3(CREB3L3), mRNA.
JD316937 - Sequence 297961 from Patent EP1572962.
AB050902 - Homo sapiens mRNA for CREB/ATF family transcription factor, complete cds.
AK172839 - Homo sapiens cDNA FLJ24000 fis, clone KAIA1329, highly similar to Homo sapiens cAMP responsive element binding protein 3-like 3 (CREB3L3).
JD334306 - Sequence 315330 from Patent EP1572962.
AB073612 - Homo sapiens primary hepatoblastoma mRNA for ATF family transcription factor CREB-H, partial cds, clone:HYST1481.
BC143609 - Homo sapiens cAMP responsive element binding protein 3-like 3, mRNA (cDNA clone MGC:177139 IMAGE:9052122), complete cds.
BC101504 - Homo sapiens cAMP responsive element binding protein 3-like 3, mRNA (cDNA clone MGC:126553 IMAGE:8069010), complete cds.
BC143610 - Homo sapiens cDNA clone IMAGE:9052123.
BC101508 - Homo sapiens cAMP responsive element binding protein 3-like 3, mRNA (cDNA clone MGC:126557 IMAGE:8069014), complete cds.
EU446882 - Synthetic construct Homo sapiens clone IMAGE:100070235; IMAGE:100012091; FLH258759.01L cAMP responsive element binding protein 3-like 3 (CREB3L3) gene, encodes complete protein.
JD122071 - Sequence 103095 from Patent EP1572962.
JD203686 - Sequence 184710 from Patent EP1572962.
JD329366 - Sequence 310390 from Patent EP1572962.
JD108698 - Sequence 89722 from Patent EP1572962.
JD439739 - Sequence 420763 from Patent EP1572962.
JD395282 - Sequence 376306 from Patent EP1572962.
JD442651 - Sequence 423675 from Patent EP1572962.
JD320802 - Sequence 301826 from Patent EP1572962.
JD103081 - Sequence 84105 from Patent EP1572962.
JD168729 - Sequence 149753 from Patent EP1572962.
JD316720 - Sequence 297744 from Patent EP1572962.
JD316791 - Sequence 297815 from Patent EP1572962.
JD329673 - Sequence 310697 from Patent EP1572962.
JD415977 - Sequence 397001 from Patent EP1572962.
JD460242 - Sequence 441266 from Patent EP1572962.
JD069264 - Sequence 50288 from Patent EP1572962.
JD494727 - Sequence 475751 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q68CJ9 (Reactome details) participates in the following event(s):

R-HSA-6784620 MBTPS1,2 cleaves CREB3L3 to CREB3L3(1-?) and CREB3L3(?-461)
R-HSA-8874206 MBTPS1 (S1P) cleaves CREB3L3
R-HSA-8874201 MBTPS2 (S2P) cleaves CREB3L3
R-HSA-8963889 Assembly of active LPL and LIPC lipase complexes
R-HSA-8874211 CREB3 factors activate genes
R-HSA-8963899 Plasma lipoprotein remodeling
R-HSA-381119 Unfolded Protein Response (UPR)
R-HSA-174824 Plasma lipoprotein assembly, remodeling, and clearance
R-HSA-392499 Metabolism of proteins
R-HSA-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: B2R7S6, B7ZL69, CR3L3_HUMAN, CREBH, ENST00000078445.1, ENST00000078445.2, ENST00000078445.3, ENST00000078445.4, ENST00000078445.5, ENST00000078445.6, HYST1481, M0QYW7, NM_032607, Q68CJ9, Q6ZMC5, Q96TB9, uc317cay.1, uc317cay.2
UCSC ID: ENST00000078445.7_7
RefSeq Accession: NM_032607.3
Protein: Q68CJ9 (aka CR3L3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.