Human Gene CSNK2A2 (ENST00000262506.8_7) from GENCODE V47lift37
  Description: casein kinase 2 alpha 2 (from RefSeq NM_001896.4)
Gencode Transcript: ENST00000262506.8_7
Gencode Gene: ENSG00000070770.10_13
Transcript (Including UTRs)
   Position: hg19 chr16:58,191,811-58,232,010 Size: 40,200 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr16:58,197,975-58,231,640 Size: 33,666 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:58,191,811-58,232,010)mRNA (may differ from genome)Protein (350 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CSK22_HUMAN
DESCRIPTION: RecName: Full=Casein kinase II subunit alpha'; Short=CK II alpha'; EC=2.7.11.1;
FUNCTION: Catalytic subunit of a constitutively active serine/threonine-protein kinase complex that phosphorylates a large number of substrates containing acidic residues C-terminal to the phosphorylated serine or threonine. Regulates numerous cellular processes, such as cell cycle progression, apoptosis and transcription, as well as viral infection. May act as a regulatory node which integrates and coordinates numerous signals leading to an appropriate cellular response. During mitosis, functions as a component of the p53/TP53-dependent spindle assembly checkpoint (SAC) that maintains cyclin-B-CDK1 activity and G2 arrest in response to spindle damage. Also required for p53/TP53-mediated apoptosis, phosphorylating 'Ser-392' of p53/TP53 following UV irradiation. Can also negatively regulate apoptosis. Phosphorylates the caspases CASP9 and CASP2 and the apoptotic regulator NOL3. Phosphorylation protects CASP9 from cleavage and activation by CASP8, and inhibits the dimerization of CASP2 and activation of CASP8. Regulates transcription by direct phosphorylation of RNA polymerases I, II, III and IV. Also phosphorylates and regulates numerous transcription factors including NF-kappa-B, STAT1, CREB1, IRF1, IRF2, ATF1, SRF, MAX, JUN, FOS, MYC and MYB. Phosphorylates Hsp90 and its co-chaperones FKBP4 and CDC37, which is essential for chaperone function. Regulates Wnt signaling by phosphorylating CTNNB1 and the transcription factor LEF1. Acts as an ectokinase that phosphorylates several extracellular proteins. During viral infection, phosphorylates various proteins involved in the viral life cycles of EBV, HSV, HBV, HCV, HIV, CMV and HPV.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Constitutively active protein kinase whose activity is not directly affected by phosphorylation. Seems to be regulated by level of expression and localization (By similarity).
SUBUNIT: Heterotetramer composed of two catalytic subunits (alpha chain and/or alpha' chain) and two regulatory subunits (beta chains). The tetramer can exist as a combination of 2 alpha/2 beta, 2 alpha'/2 beta or 1 alpha/1 alpha'/2 beta subunits. Also part of a CK2-SPT16-SSRP1 complex composed of SSRP1, SUPT16H, CSNK2A1, CSNK2A2 and CSNK2B, which forms following UV irradiation. Interacts with RNPS1.
INTERACTION: P68400:CSNK2A1; NbExp=2; IntAct=EBI-347451, EBI-347804; P67870:CSNK2B; NbExp=4; IntAct=EBI-347451, EBI-348169; O60282:KIF5C; NbExp=4; IntAct=EBI-347451, EBI-717170;
MISCELLANEOUS: Can use both ATP and GTP as phosphoryl donors. Phosphorylation by casein kinase 2 has been estimated to represent up to one quarter of the eukaryotic phosphoproteome.
SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. CK2 subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CSNK2A2
Diseases sorted by gene-association score: theileriasis (20), spermatogenic failure 6 (9)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 45.49 RPKM in Testis
Total median expression: 568.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -185.30370-0.501 Picture PostScript Text
3' UTR -124.20464-0.268 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF01636 - Phosphotransferase enzyme family
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3E3B - X-ray MuPIT 3OFM - X-ray MuPIT 3U87 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P19784
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0047485 protein N-terminus binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0007049 cell cycle
GO:0007283 spermatogenesis
GO:0016055 Wnt signaling pathway
GO:0016310 phosphorylation
GO:0021987 cerebral cortex development
GO:0051726 regulation of cell cycle
GO:0097421 liver regeneration
GO:1901796 regulation of signal transduction by p53 class mediator
GO:1903146 regulation of mitophagy
GO:1903955 positive regulation of protein targeting to mitochondrion

Cellular Component:
GO:0000785 chromatin
GO:0001669 acrosomal vesicle
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0031519 PcG protein complex


-  Descriptions from all associated GenBank mRNAs
  LF208243 - JP 2014500723-A/15746: Polycomb-Associated Non-Coding RNAs.
BC008812 - Homo sapiens casein kinase 2, alpha prime polypeptide, mRNA (cDNA clone MGC:10397 IMAGE:3951914), complete cds.
LF384433 - JP 2014500723-A/191936: Polycomb-Associated Non-Coding RNAs.
M55268 - Human casein kinase II alpha' subunit mRNA, complete cds.
AK125922 - Homo sapiens cDNA FLJ43934 fis, clone TESTI4013735.
MA620010 - JP 2018138019-A/191936: Polycomb-Associated Non-Coding RNAs.
MA443820 - JP 2018138019-A/15746: Polycomb-Associated Non-Coding RNAs.
JD100605 - Sequence 81629 from Patent EP1572962.
JD129349 - Sequence 110373 from Patent EP1572962.
JD469606 - Sequence 450630 from Patent EP1572962.
JD537699 - Sequence 518723 from Patent EP1572962.
JD247837 - Sequence 228861 from Patent EP1572962.
JD495833 - Sequence 476857 from Patent EP1572962.
LF373809 - JP 2014500723-A/181312: Polycomb-Associated Non-Coding RNAs.
MA609386 - JP 2018138019-A/181312: Polycomb-Associated Non-Coding RNAs.
KJ890988 - Synthetic construct Homo sapiens clone ccsbBroadEn_00382 CSNK2A2 gene, encodes complete protein.
DQ893025 - Synthetic construct clone IMAGE:100005655; FLH191774.01X; RZPDo839G1077D casein kinase 2, alpha prime polypeptide (CSNK2A2) gene, encodes complete protein.
DQ896269 - Synthetic construct Homo sapiens clone IMAGE:100010729; FLH191770.01L; RZPDo839G1067D casein kinase 2, alpha prime polypeptide (CSNK2A2) gene, encodes complete protein.
AB463465 - Synthetic construct DNA, clone: pF1KB6452, Homo sapiens CSNK2A2 gene for casein kinase 2, alpha prime polypeptide, without stop codon, in Flexi system.
LF373817 - JP 2014500723-A/181320: Polycomb-Associated Non-Coding RNAs.
LF373818 - JP 2014500723-A/181321: Polycomb-Associated Non-Coding RNAs.
LF373820 - JP 2014500723-A/181323: Polycomb-Associated Non-Coding RNAs.
LF373841 - JP 2014500723-A/181344: Polycomb-Associated Non-Coding RNAs.
LF373842 - JP 2014500723-A/181345: Polycomb-Associated Non-Coding RNAs.
JD389936 - Sequence 370960 from Patent EP1572962.
MA609394 - JP 2018138019-A/181320: Polycomb-Associated Non-Coding RNAs.
MA609395 - JP 2018138019-A/181321: Polycomb-Associated Non-Coding RNAs.
MA609397 - JP 2018138019-A/181323: Polycomb-Associated Non-Coding RNAs.
MA609418 - JP 2018138019-A/181344: Polycomb-Associated Non-Coding RNAs.
MA609419 - JP 2018138019-A/181345: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P19784 (Reactome details) participates in the following event(s):

R-HSA-392752 Phosphorylation of L1 by CK-II
R-HSA-6805061 CK2 binds FACT
R-HSA-201717 CSNK2-mediated phosphorylation of DVL
R-HSA-2529020 CK2 phosphorylates condensin I subunits
R-HSA-6814409 CK2 phosphorylates PDCL
R-HSA-8948039 FUNDC1 is phosphorylated by CK2
R-HSA-8850945 Casein kinase II phosphorylates PTEN
R-HSA-8873929 Casein kinase II phosphorylates STARD10
R-HSA-6805059 CK2:FACT phosphorylates TP53
R-HSA-8937989 RUNX1 binds PRC1 complexes
R-HSA-445144 Signal transduction by L1
R-HSA-6804756 Regulation of TP53 Activity through Phosphorylation
R-HSA-373760 L1CAM interactions
R-HSA-201688 WNT mediated activation of DVL
R-HSA-2514853 Condensation of Prometaphase Chromosomes
R-HSA-6814122 Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding
R-HSA-8934903 Receptor Mediated Mitophagy
R-HSA-8948751 Regulation of PTEN stability and activity
R-HSA-1483191 Synthesis of PC
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-422475 Axon guidance
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-68877 Mitotic Prometaphase
R-HSA-390466 Chaperonin-mediated protein folding
R-HSA-5205647 Mitophagy
R-HSA-6807070 PTEN Regulation
R-HSA-1483206 Glycerophospholipid biosynthesis
R-HSA-8939243 RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-1266738 Developmental Biology
R-HSA-195721 Signaling by WNT
R-HSA-68886 M Phase
R-HSA-391251 Protein folding
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-1483257 Phospholipid metabolism
R-HSA-8878171 Transcriptional regulation by RUNX1
R-HSA-212436 Generic Transcription Pathway
R-HSA-162582 Signal Transduction
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-392499 Metabolism of proteins
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-556833 Metabolism of lipids
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-1640170 Cell Cycle
R-HSA-1430728 Metabolism
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: CK2A2, CSK22_HUMAN, ENST00000262506.1, ENST00000262506.2, ENST00000262506.3, ENST00000262506.4, ENST00000262506.5, ENST00000262506.6, ENST00000262506.7, NM_001896, P19784, uc317hbc.1, uc317hbc.2
UCSC ID: ENST00000262506.8_7
RefSeq Accession: NM_001896.4
Protein: P19784 (aka CSK22_HUMAN or KC22_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.