Human Gene DCAF7 (ENST00000614556.5_4) from GENCODE V47lift37
  Description: DDB1 and CUL4 associated factor 7, transcript variant 1 (from RefSeq NM_005828.5)
Gencode Transcript: ENST00000614556.5_4
Gencode Gene: ENSG00000136485.16_10
Transcript (Including UTRs)
   Position: hg19 chr17:61,627,838-61,671,628 Size: 43,791 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr17:61,628,039-61,666,534 Size: 38,496 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:61,627,838-61,671,628)mRNA (may differ from genome)Protein (342 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DCAF7_HUMAN
DESCRIPTION: RecName: Full=DDB1- and CUL4-associated factor 7; AltName: Full=WD repeat-containing protein 68; AltName: Full=WD repeat-containing protein An11 homolog;
FUNCTION: Involved in craniofacial development. Acts upstream of the EDN1 pathway and is required for formation of the upper jaw equivalent, the palatoquadrate. The activity required for EDN1 pathway function differs between the first and second arches (By similarity). Associates with DIAPH1 and controls GLI1 transcriptional activity. Could be involved in normal and disease skin development. May function as a substrate receptor for CUL4- DDB1 E3 ubiquitin-protein ligase complex.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Interacts with DYRK1A, DYRK1B and DIAPH1. Interacts with DDB1. Interacts with ZNF703.
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Overexpression of DIAHP1 or active RHOA causes translocation from the nucleus to cytoplasm.
SIMILARITY: Belongs to the WD repeat DCAF7 family.
SIMILARITY: Contains 4 WD repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -63.30201-0.315 Picture PostScript Text
3' UTR -1664.305094-0.327 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR019775 - WD40_repeat_CS
IPR017986 - WD40_repeat_dom

Pfam Domains:
PF00400 - WD domain, G-beta repeat

SCOP Domains:
50952 - Soluble quinoprotein glucose dehydrogenase
50956 - Thermostable phytase (3-phytase)
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
117289 - Nucleoporin domain
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Peptidase/esterase 'gauge' domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like

ModBase Predicted Comparative 3D Structure on P61962
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0007275 multicellular organism development
GO:0016567 protein ubiquitination
GO:0043687 post-translational protein modification

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016363 nuclear matrix
GO:0016604 nuclear body
GO:0032991 macromolecular complex
GO:0080008 Cul4-RING E3 ubiquitin ligase complex


-  Descriptions from all associated GenBank mRNAs
  LF209391 - JP 2014500723-A/16894: Polycomb-Associated Non-Coding RNAs.
AK294925 - Homo sapiens cDNA FLJ60519 complete cds, highly similar to WD repeat protein 68.
BC001264 - Homo sapiens WD repeat domain 68, mRNA (cDNA clone MGC:5032 IMAGE:3458293), complete cds.
AK303212 - Homo sapiens cDNA FLJ54214 complete cds, highly similar to WD repeat protein 68.
U94747 - Human WD repeat protein HAN11 mRNA, complete cds.
JD187099 - Sequence 168123 from Patent EP1572962.
LF328209 - JP 2014500723-A/135712: Polycomb-Associated Non-Coding RNAs.
JD462510 - Sequence 443534 from Patent EP1572962.
DQ894417 - Synthetic construct Homo sapiens clone IMAGE:100008877; FLH170379.01L; RZPDo839E1097D WD repeat domain 68 (WDR68) gene, encodes complete protein.
DQ891233 - Synthetic construct clone IMAGE:100003863; FLH170383.01X; RZPDo839E1098D WD repeat domain 68 (WDR68) gene, encodes complete protein.
AB590131 - Synthetic construct DNA, clone: pFN21AE2278, Homo sapiens DCAF7 gene for DDB1 and CUL4 associated factor 7, without stop codon, in Flexi system.
KJ892972 - Synthetic construct Homo sapiens clone ccsbBroadEn_02366 DCAF7 gene, encodes complete protein.
AK022145 - Homo sapiens cDNA FLJ12083 fis, clone HEMBB1002495.
LF328213 - JP 2014500723-A/135716: Polycomb-Associated Non-Coding RNAs.
LF328214 - JP 2014500723-A/135717: Polycomb-Associated Non-Coding RNAs.
LF328216 - JP 2014500723-A/135719: Polycomb-Associated Non-Coding RNAs.
LF328217 - JP 2014500723-A/135720: Polycomb-Associated Non-Coding RNAs.
LF328218 - JP 2014500723-A/135721: Polycomb-Associated Non-Coding RNAs.
LF328220 - JP 2014500723-A/135723: Polycomb-Associated Non-Coding RNAs.
LF328221 - JP 2014500723-A/135724: Polycomb-Associated Non-Coding RNAs.
LF328222 - JP 2014500723-A/135725: Polycomb-Associated Non-Coding RNAs.
JD102715 - Sequence 83739 from Patent EP1572962.
JD271853 - Sequence 252877 from Patent EP1572962.
JD151546 - Sequence 132570 from Patent EP1572962.
BX648608 - Homo sapiens mRNA; cDNA DKFZp686K18216 (from clone DKFZp686K18216).
LF328223 - JP 2014500723-A/135726: Polycomb-Associated Non-Coding RNAs.
LF328224 - JP 2014500723-A/135727: Polycomb-Associated Non-Coding RNAs.
BC027489 - Homo sapiens WD repeat domain 68, mRNA (cDNA clone IMAGE:5122333).
DQ590636 - Homo sapiens piRNA piR-57748, complete sequence.
AK026008 - Homo sapiens cDNA: FLJ22355 fis, clone HRC06344.
LF328225 - JP 2014500723-A/135728: Polycomb-Associated Non-Coding RNAs.
LF328226 - JP 2014500723-A/135729: Polycomb-Associated Non-Coding RNAs.
DQ577731 - Homo sapiens piRNA piR-45843, complete sequence.
AK025925 - Homo sapiens cDNA: FLJ22272 fis, clone HRC03192.
AL832440 - Homo sapiens mRNA; cDNA DKFZp762G124 (from clone DKFZp762G124).
BC024682 - Homo sapiens cDNA clone IMAGE:4704910.
LF328227 - JP 2014500723-A/135730: Polycomb-Associated Non-Coding RNAs.
MA563786 - JP 2018138019-A/135712: Polycomb-Associated Non-Coding RNAs.
MA563790 - JP 2018138019-A/135716: Polycomb-Associated Non-Coding RNAs.
MA563791 - JP 2018138019-A/135717: Polycomb-Associated Non-Coding RNAs.
MA563793 - JP 2018138019-A/135719: Polycomb-Associated Non-Coding RNAs.
MA563794 - JP 2018138019-A/135720: Polycomb-Associated Non-Coding RNAs.
MA563795 - JP 2018138019-A/135721: Polycomb-Associated Non-Coding RNAs.
MA563797 - JP 2018138019-A/135723: Polycomb-Associated Non-Coding RNAs.
MA563798 - JP 2018138019-A/135724: Polycomb-Associated Non-Coding RNAs.
MA563799 - JP 2018138019-A/135725: Polycomb-Associated Non-Coding RNAs.
MA563800 - JP 2018138019-A/135726: Polycomb-Associated Non-Coding RNAs.
MA563801 - JP 2018138019-A/135727: Polycomb-Associated Non-Coding RNAs.
MA563802 - JP 2018138019-A/135728: Polycomb-Associated Non-Coding RNAs.
MA563803 - JP 2018138019-A/135729: Polycomb-Associated Non-Coding RNAs.
MA563804 - JP 2018138019-A/135730: Polycomb-Associated Non-Coding RNAs.
MA444968 - JP 2018138019-A/16894: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P61962 (Reactome details) participates in the following event(s):

R-HSA-390470 Association of CCT/TriC with other substrates during biosynthesis (unknown chaperone)
R-HSA-8955245 CAND1 binds CRL4 E3 ubiquitin ligase in the nucleus
R-HSA-8955285 COMMDs displace CAND1 from CRL4 E3 ubiquitin ligase complex
R-HSA-8952639 NEDD8:AcM-UBE2M binds CRL4 E3 ubiquitin ligase complex
R-HSA-8956045 COP9 signalosome deneddylates nuclear CRL4 E3 ubiquitin ligase complex
R-HSA-8952638 AcM-UBE2M transfers NEDD8 to CRL4 E3 ubiquitin ligase complex
R-HSA-390471 Association of TriC/CCT with target proteins during biosynthesis
R-HSA-390466 Chaperonin-mediated protein folding
R-HSA-8951664 Neddylation
R-HSA-391251 Protein folding
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B4E039, D3DU14, DCAF7_HUMAN, ENST00000614556.1, ENST00000614556.2, ENST00000614556.3, ENST00000614556.4, HAN11, NM_005828, O15491, P61962, Q9DAE4, uc327pih.1, uc327pih.2, WDR68
UCSC ID: ENST00000614556.5_4
RefSeq Accession: NM_005828.5
Protein: P61962 (aka DCAF7_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.