Human Gene DDA1 (ENST00000359866.9_4) from GENCODE V47lift37
  Description: DET1 and DDB1 associated 1 (from RefSeq NM_024050.6)
Gencode Transcript: ENST00000359866.9_4
Gencode Gene: ENSG00000130311.11_7
Transcript (Including UTRs)
   Position: hg19 chr19:17,420,372-17,434,107 Size: 13,736 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr19:17,420,464-17,430,465 Size: 10,002 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:17,420,372-17,434,107)mRNA (may differ from genome)Protein (102 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DDA1_HUMAN
DESCRIPTION: RecName: Full=DET1- and DDB1-associated protein 1; AltName: Full=Placenta cross-immune reaction antigen 1; Short=PCIA-1;
FUNCTION: May be involved in ubiquitination and subsequent proteasomal degradation of target proteins. Component of the DDD- E2 complexes which may provide a platform for interaction with CUL4A and WD repeat proteins.
SUBUNIT: Part of the DDD core complex containing DET1, DDA1 and DDB1. The DDD core complex recruits a specific UBE2E enzyme, such as UBE2E1, UBE2E2 UBE2E3, to form specific DDD-E2 complexes.
SIMILARITY: Belongs to the DDA1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 64.61 RPKM in Testis
Total median expression: 1181.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.0092-0.337 Picture PostScript Text
3' UTR -1498.103642-0.411 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018276 - Ub_ligase_Det1/DDB1-complexing

Pfam Domains:
PF10172 - Det1 complexing ubiquitin ligase

ModBase Predicted Comparative 3D Structure on Q9BW61
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043687 post-translational protein modification

Cellular Component:
GO:0005654 nucleoplasm
GO:0080008 Cul4-RING E3 ubiquitin ligase complex


-  Descriptions from all associated GenBank mRNAs
  AL832922 - Homo sapiens mRNA; cDNA DKFZp762P0215 (from clone DKFZp762P0215).
AY563006 - Homo sapiens cross-immune reaction antigen PCIA1 (PCIA1) mRNA, complete cds.
DQ090952 - Homo sapiens DDA1 (DDA1) mRNA, complete cds.
BC000615 - Homo sapiens DET1 and DDB1 associated 1, mRNA (cDNA clone MGC:2594 IMAGE:3346055), complete cds.
JD152846 - Sequence 133870 from Patent EP1572962.
JD211284 - Sequence 192308 from Patent EP1572962.
KJ894631 - Synthetic construct Homo sapiens clone ccsbBroadEn_04025 DDA1 gene, encodes complete protein.
JD324730 - Sequence 305754 from Patent EP1572962.
JD111311 - Sequence 92335 from Patent EP1572962.
JD051075 - Sequence 32099 from Patent EP1572962.
DQ579965 - Homo sapiens piRNA piR-48077, complete sequence.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BW61 (Reactome details) participates in the following event(s):

R-HSA-8955245 CAND1 binds CRL4 E3 ubiquitin ligase in the nucleus
R-HSA-8955285 COMMDs displace CAND1 from CRL4 E3 ubiquitin ligase complex
R-HSA-8952639 NEDD8:AcM-UBE2M binds CRL4 E3 ubiquitin ligase complex
R-HSA-8956045 COP9 signalosome deneddylates nuclear CRL4 E3 ubiquitin ligase complex
R-HSA-8952638 AcM-UBE2M transfers NEDD8 to CRL4 E3 ubiquitin ligase complex
R-HSA-8951664 Neddylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: C19orf58 , DDA1 , DDA1_HUMAN, ENST00000359866.1, ENST00000359866.2, ENST00000359866.3, ENST00000359866.4, ENST00000359866.5, ENST00000359866.6, ENST00000359866.7, ENST00000359866.8, NM_024050, PCIA1 , Q9BW61, uc318bgl.1, uc318bgl.2
UCSC ID: ENST00000359866.9_4
RefSeq Accession: NM_024050.6
Protein: Q9BW61 (aka DDA1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.