Human Gene DIAPH3 (ENST00000400324.9_9) from GENCODE V47lift37
  Description: diaphanous related formin 3, transcript variant 1 (from RefSeq NM_001042517.2)
Gencode Transcript: ENST00000400324.9_9
Gencode Gene: ENSG00000139734.19_13
Transcript (Including UTRs)
   Position: hg19 chr13:60,239,717-60,738,062 Size: 498,346 Total Exon Count: 28 Strand: -
Coding Region
   Position: hg19 chr13:60,240,718-60,737,900 Size: 497,183 Coding Exon Count: 28 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:60,239,717-60,738,062)mRNA (may differ from genome)Protein (1193 aa)
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UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DIAP3_HUMAN
DESCRIPTION: RecName: Full=Protein diaphanous homolog 3; AltName: Full=Diaphanous-related formin-3; Short=DRF3; AltName: Full=MDia2;
FUNCTION: Binds to GTP-bound form of Rho and to profilin. Acts in a Rho-dependent manner to recruit profilin to the membrane, where it promotes actin polymerization. It is required for cytokinesis, stress fiber formation, and transcriptional activation of the serum response factor. DFR proteins couple Rho and Src tyrosine kinase during signaling and the regulation of actin dynamics (By similarity).
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Note=During mitosis, co- localizes with the actin-rich cleavage furrow and with the microtubule-rich central spindle during cytokinesis.
DEVELOPMENTAL STAGE: Increased expression in S phase and mitotic cells; levels decrease as cells enter in G0/G1 phase due to proteasomal degradation (at protein level).
DOMAIN: The DAD domain regulates activation via by an autoinhibitory interaction with the GBD/FH3 domain. This autoinhibition is released upon competitive binding of an activated GTPase. The release of DAD allows the FH2 domain to then nucleate and elongate nonbranched actin filaments (By similarity).
DISEASE: Defects in DIAPH3 are the cause of auditory neuropathy, autosomal dominant, type 1 (AUNA1) [MIM:609129]. A form of sensorineural hearing loss with absent or severely abnormal auditory brainstem response, in the presence of normal cochlear outer hair cell function and normal otoacoustic emissions. Auditory neuropathies result from a lesion in the area including the inner hair cells, connections between the inner hair cells and the cochlear branch of the auditory nerve, the auditory nerve itself and auditory pathways of the brainstem. Note=A disease- causing mutation in the conserved 5'-UTR leads to increased protein expression (PubMed:20624953).
SIMILARITY: Belongs to the formin homology family. Diaphanous subfamily.
SIMILARITY: Contains 1 DAD (diaphanous autoregulatory) domain.
SIMILARITY: Contains 1 FH1 (formin homology 1) domain.
SIMILARITY: Contains 1 FH2 (formin homology 2) domain.
SIMILARITY: Contains 1 GBD/FH3 (Rho GTPase-binding/formin homology 3) domain.
SEQUENCE CAUTION: Sequence=AAW73254.1; Type=Frameshift; Positions=1147;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DIAPH3
Diseases sorted by gene-association score: auditory neuropathy, autosomal dominant, 1* (1038), autosomal dominant non-syndromic sensorineural deafness type dfna* (65), auditory neuropathy (50), deafness, autosomal recessive 59 (12), neuropathy (12)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.60 RPKM in Testis
Total median expression: 28.98 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -61.50162-0.380 Picture PostScript Text
3' UTR -211.501001-0.211 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003104 - Actin-bd_FH2/DRF_autoreg
IPR016024 - ARM-type_fold
IPR014767 - Diaphanous_autoregulatory
IPR010465 - Drf_DAD
IPR010472 - Drf_FH3
IPR010473 - Drf_GTPase-bd
IPR015425 - FH2_actin-bd
IPR014768 - GTPase-bd/formin_homology_3

Pfam Domains:
PF02181 - Formin Homology 2 Domain
PF06367 - Diaphanous FH3 Domain
PF06371 - Diaphanous GTPase-binding Domain

SCOP Domains:
48371 - ARM repeat
101447 - Formin homology 2 domain (FH2 domain)
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on Q9NSV4
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0017048 Rho GTPase binding
GO:0045296 cadherin binding

Biological Process:
GO:0007283 spermatogenesis
GO:0016043 cellular component organization
GO:0030036 actin cytoskeleton organization

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BC041395 - Homo sapiens cDNA clone IMAGE:5277415, partial cds.
AY750055 - Homo sapiens diaphanous homolog 3 (DIAPH3) mRNA, complete cds.
AB244756 - Homo sapiens diap3 mRNA for mammalian diaphanous homologue 2, complete cds.
AB244757 - Homo sapiens diap3 mRNA for mammalian diaphanous homologue 2_splice_variant1, complete cds.
AB244758 - Homo sapiens diap3 mRNA for mammalian diaphanous homologue 2_splice_variant2, complete cds.
BC034952 - Homo sapiens diaphanous homolog 3 (Drosophila), mRNA (cDNA clone MGC:26208 IMAGE:4830888), complete cds.
BC068504 - Homo sapiens diaphanous homolog 3 (Drosophila), mRNA (cDNA clone MGC:87246 IMAGE:4838507), complete cds.
BC048963 - Homo sapiens diaphanous homolog 3 (Drosophila), mRNA (cDNA clone MGC:57135 IMAGE:5265490), complete cds.
AY818645 - Homo sapiens diaphanous-related formin 3 (DIAPH3) mRNA, complete cds.
KJ894855 - Synthetic construct Homo sapiens clone ccsbBroadEn_04249 DIAPH3 gene, encodes complete protein.
AK307652 - Homo sapiens cDNA, FLJ97600.
AK298509 - Homo sapiens cDNA FLJ58109 partial cds, highly similar to Protein diaphanous homolog 3.
AK316474 - Homo sapiens cDNA, FLJ79373 partial cds, highly similar to Protein diaphanous homolog 3.
AL137718 - Homo sapiens mRNA; cDNA DKFZp434C0931 (from clone DKFZp434C0931).
AK092024 - Homo sapiens cDNA FLJ34705 fis, clone MESAN2003035, highly similar to Mus musculus diaphanous-related formin (Dia2) mRNA.
AX747319 - Sequence 844 from Patent EP1308459.
BX649186 - Homo sapiens mRNA; cDNA DKFZp686A13178 (from clone DKFZp686A13178).
CU690586 - Synthetic construct Homo sapiens gateway clone IMAGE:100021007 5' read DIAPH3 mRNA.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NSV4 (Reactome details) participates in the following event(s):

R-HSA-5666070 RHOB:GTP recruits DIAPH1 or DIAPH3 to endosomes
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-195258 RHO GTPase Effectors
R-HSA-194315 Signaling by Rho GTPases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A2A3B8, A2A3B9, A2A3C0, DIAP3, DIAP3_HUMAN, ENST00000400324.1, ENST00000400324.2, ENST00000400324.3, ENST00000400324.4, ENST00000400324.5, ENST00000400324.6, ENST00000400324.7, ENST00000400324.8, NM_001042517, Q18P99, Q18PA0, Q18PA1, Q2KPB6, Q3ZK23, Q5JTP8, Q5T2S7, Q5XKF6, Q6MZF0, Q6NUP0, Q86VS4, Q8NAV4, Q9NSV4, uc319avg.1, uc319avg.2
UCSC ID: ENST00000400324.9_9
RefSeq Accession: NM_001042517.2
Protein: Q9NSV4 (aka DIAP3_HUMAN or DIA3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.