Human Gene DKK3 (ENST00000683431.1_3) from GENCODE V47lift37
  Description: dickkopf WNT signaling pathway inhibitor 3, transcript variant 3 (from RefSeq NM_001018057.2)
Gencode Transcript: ENST00000683431.1_3
Gencode Gene: ENSG00000050165.19_12
Transcript (Including UTRs)
   Position: hg19 chr11:11,984,583-12,030,173 Size: 45,591 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr11:11,986,011-12,030,129 Size: 44,119 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:11,984,583-12,030,173)mRNA (may differ from genome)Protein (350 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DKK3_HUMAN
DESCRIPTION: RecName: Full=Dickkopf-related protein 3; Short=Dickkopf-3; Short=Dkk-3; Short=hDkk-3; Flags: Precursor;
FUNCTION: Antagonizes canonical Wnt signaling by inhibiting LRP5/6 interaction with Wnt and by forming a ternary complex with the transmembrane protein KREMEN that promotes internalization of LRP5/6. DKKs play an important role in vertebrate development, where they locally inhibit Wnt regulated processes such as antero- posterior axial patterning, limb development, somitogenesis and eye formation. In the adult, Dkks are implicated in bone formation and bone disease, cancer and Alzheimer disease (By similarity).
SUBUNIT: Interacts with LRP5 and LRP6 (By similarity).
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Highest expression in heart, brain, and spinal cord.
DOMAIN: The C-terminal cysteine-rich domain mediates interaction with LRP5 and LRP6 (By similarity).
PTM: N- and O-glycosylated.
SIMILARITY: Belongs to the dickkopf family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DKK3
Diseases sorted by gene-association score: oral submucous fibrosis (7), retinitis pigmentosa, x-linked recessive, 6 (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -11.6044-0.264 Picture PostScript Text
3' UTR -436.201428-0.305 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006796 - Dickkopf_N

Pfam Domains:
PF04706 - Dickkopf N-terminal cysteine-rich region

ModBase Predicted Comparative 3D Structure on Q9UBP4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0007275 multicellular organism development
GO:0009653 anatomical structure morphogenesis
GO:0016055 Wnt signaling pathway
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway
GO:0030178 negative regulation of Wnt signaling pathway
GO:0030325 adrenal gland development
GO:0032348 negative regulation of aldosterone biosynthetic process
GO:0045892 negative regulation of transcription, DNA-templated
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:1902613 negative regulation of anti-Mullerian hormone signaling pathway
GO:2000065 negative regulation of cortisol biosynthetic process

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space


-  Descriptions from all associated GenBank mRNAs
  AF034208 - Homo sapiens RIG-like 7-1 mRNA, complete cds.
AF052161 - Homo sapiens clone 24429 mRNA sequence.
AK090952 - Homo sapiens cDNA FLJ33633 fis, clone BRAMY2022786, highly similar to Homo sapiens dickkopf-3 (DKK-3) mRNA.
AX746701 - Sequence 226 from Patent EP1308459.
AF177396 - Homo sapiens dickkopf-3 (DKK-3) mRNA, complete cds.
AK092979 - Homo sapiens cDNA FLJ35660 fis, clone SPLEN2017538, highly similar to Dickkopf-related protein 3 precursor.
AK098756 - Homo sapiens cDNA FLJ25890 fis, clone CBR03206, highly similar to Dickkopf gene 3; RIG-like 7-1.
AB034203 - Homo sapiens REIC/Dkk-3 mRNA, complete cds.
BC007660 - Homo sapiens dickkopf homolog 3 (Xenopus laevis), mRNA (cDNA clone MGC:1123 IMAGE:3347453), complete cds.
AB057591 - Homo sapiens mRNA for REIC, complete cds.
AY358378 - Homo sapiens clone DNA38268 DKK3 (UNQ258) mRNA, complete cds.
JD048464 - Sequence 29488 from Patent EP1572962.
JD339519 - Sequence 320543 from Patent EP1572962.
JD311676 - Sequence 292700 from Patent EP1572962.
JD147880 - Sequence 128904 from Patent EP1572962.
JD495615 - Sequence 476639 from Patent EP1572962.
JD046521 - Sequence 27545 from Patent EP1572962.
JD068960 - Sequence 49984 from Patent EP1572962.
JD370755 - Sequence 351779 from Patent EP1572962.
JD090718 - Sequence 71742 from Patent EP1572962.
JD057069 - Sequence 38093 from Patent EP1572962.
JD230477 - Sequence 211501 from Patent EP1572962.
JD419220 - Sequence 400244 from Patent EP1572962.
JD434243 - Sequence 415267 from Patent EP1572962.
AK225156 - Homo sapiens mRNA for Dickkopf-related protein 3 precursor variant, clone: CBR02247.
JD183446 - Sequence 164470 from Patent EP1572962.
AB033421 - Homo sapiens dickkopf-3 mRNA, complete cds.
AK289897 - Homo sapiens cDNA FLJ76226 complete cds, highly similar to Homo sapiens dickkopf homolog 3 (Xenopus laevis) (DKK3), mRNA.
JD261300 - Sequence 242324 from Patent EP1572962.
AK295539 - Homo sapiens cDNA FLJ52545 complete cds, highly similar to Dickkopf-related protein 3 precursor.
JD507812 - Sequence 488836 from Patent EP1572962.
AK295441 - Homo sapiens cDNA FLJ59893 complete cds, highly similar to Dickkopf-related protein 3 precursor.
JD238688 - Sequence 219712 from Patent EP1572962.
AY587550 - Homo sapiens putative tumor suppressor Dkk-3/REIC (DKK3) mRNA, complete cds.
DQ892906 - Synthetic construct clone IMAGE:100005536; FLH195808.01X; RZPDo839G06152D dickkopf homolog 3 (Xenopus laevis) (DKK3) gene, encodes complete protein.
KJ898663 - Synthetic construct Homo sapiens clone ccsbBroadEn_08057 DKK3 gene, encodes complete protein.
KR709984 - Synthetic construct Homo sapiens clone CCSBHm_00008711 DKK3 (DKK3) mRNA, encodes complete protein.
DQ896157 - Synthetic construct Homo sapiens clone IMAGE:100010617; FLH195804.01L; RZPDo839G06151D dickkopf homolog 3 (Xenopus laevis) (DKK3) gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K1I2, D3DQW1, DKK3_HUMAN, NM_001018057, Q9UBP4, Q9ULB7, REIC, uc330ljt.1, uc330ljt.2, UNQ258/PRO295
UCSC ID: ENST00000683431.1_3
RefSeq Accession: NM_001018057.2
Protein: Q9UBP4 (aka DKK3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
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