Human Gene DNAJC3 (ENST00000602402.6_4) from GENCODE V47lift37
  Description: DnaJ heat shock protein family (Hsp40) member C3 (from RefSeq NM_006260.5)
Gencode Transcript: ENST00000602402.6_4
Gencode Gene: ENSG00000102580.15_8
Transcript (Including UTRs)
   Position: hg19 chr13:96,329,393-96,447,242 Size: 117,850 Total Exon Count: 12 Strand: +
Coding Region
   Position: hg19 chr13:96,329,510-96,443,284 Size: 113,775 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:96,329,393-96,447,242)mRNA (may differ from genome)Protein (504 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DNJC3_HUMAN
DESCRIPTION: RecName: Full=DnaJ homolog subfamily C member 3; AltName: Full=Endoplasmic reticulum DnaJ protein 6; Short=ERdj6; AltName: Full=Interferon-induced, double-stranded RNA-activated protein kinase inhibitor; AltName: Full=Protein kinase inhibitor of 58 kDa; Short=Protein kinase inhibitor p58; Flags: Precursor;
FUNCTION: Involved in the unfolded protein response (UPR) during ER stress. Co-chaperone of HSPA8/HSC70, it stimulates its ATPase activity. May inhibit both the autophosphorylation of EIF2AK2/PKR and the ability of EIF2AK2 to catalyze phosphorylation of the EIF2A. May inhibit EIF2AK3/PERK activity.
SUBUNIT: Interacts with EIF2AK3 (By similarity) and EIF2AK2. Forms a trimeric complex with DNAJB1 and HSPA8. Interacts with PRKRIR/P52RIPK.
SUBCELLULAR LOCATION: Endoplasmic reticulum (By similarity).
TISSUE SPECIFICITY: Widely expressed with high level in the pancreas and testis. Also expressed in cell lines with different levels.
INDUCTION: Up-regulated during an endoplasmic reticulum stress via ATF6. Activated in response to infection by influenza virus through the dissociation of DNAJB1. Down-regulated by DNAJB1 and PRKRIR/P52RIPK.
DOMAIN: The J domain mediates interaction with HSPA8.
DOMAIN: Binding to misfolded proteins is mediated by a hydrophobic patch forming a large groove within the first two TPR repeats (By similarity).
SIMILARITY: Contains 1 J domain.
SIMILARITY: Contains 9 TPR repeats.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/dnajc3/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DNAJC3
Diseases sorted by gene-association score: ataxia, combined cerebellar and peripheral, with hearing loss and diabetes mellitus* (920), influenza (16), feingold syndrome 1 (8)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.63 RPKM in Cervix - Endocervix
Total median expression: 515.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.40117-0.414 Picture PostScript Text
3' UTR -1062.203958-0.268 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001623 - DnaJ_N
IPR026901 - DNAJC3
IPR003095 - Hsp_DnaJ
IPR001440 - TPR-1
IPR013026 - TPR-contain_dom
IPR011990 - TPR-like_helical
IPR019734 - TPR_repeat

Pfam Domains:
PF00226 - DnaJ domain
PF00515 - Tetratricopeptide repeat
PF09976 - Tetratricopeptide repeat-like domain
PF13181 - Tetratricopeptide repeat
PF13432 - Tetratricopeptide repeat
PF14559 - Tetratricopeptide repeat

SCOP Domains:
81901 - HCP-like
48439 - Protein prenylyltransferase
48452 - TPR-like
46565 - Chaperone J-domain
158837 - AGR C 984p-like
140361 - MIT domain-like
144059 - ImpE-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2Y4T - X-ray MuPIT 2Y4U - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q13217
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004860 protein kinase inhibitor activity
GO:0019901 protein kinase binding
GO:0051087 chaperone binding
GO:0051787 misfolded protein binding

Biological Process:
GO:0006417 regulation of translation
GO:0006469 negative regulation of protein kinase activity
GO:0006986 response to unfolded protein
GO:0036494 positive regulation of translation initiation in response to endoplasmic reticulum stress
GO:0036498 IRE1-mediated unfolded protein response
GO:0043066 negative regulation of apoptotic process
GO:0043312 neutrophil degranulation
GO:0043687 post-translational protein modification
GO:0044267 cellular protein metabolic process
GO:0051603 proteolysis involved in cellular protein catabolic process
GO:0051607 defense response to virus
GO:0070417 cellular response to cold
GO:1903912 negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation

Cellular Component:
GO:0005576 extracellular region
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005788 endoplasmic reticulum lumen
GO:0005790 smooth endoplasmic reticulum
GO:0005829 cytosol
GO:0016020 membrane
GO:0031205 endoplasmic reticulum Sec complex
GO:0035578 azurophil granule lumen
GO:0070062 extracellular exosome
GO:1903561 extracellular vesicle


-  Descriptions from all associated GenBank mRNAs
  LP895277 - Sequence 141 from Patent EP3253886.
AK292947 - Homo sapiens cDNA FLJ77657 complete cds, highly similar to Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 3 (DNAJC3), mRNA.
LF385020 - JP 2014500723-A/192523: Polycomb-Associated Non-Coding RNAs.
AK312861 - Homo sapiens cDNA, FLJ93304, Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 3 (DNAJC3),mRNA.
BC047936 - Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:49907 IMAGE:5215035), complete cds.
BC020215 - Homo sapiens mRNA similar to DnaJ (Hsp40) homolog, subfamily C, member 3 (cDNA clone IMAGE:3678014).
BC033823 - Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone IMAGE:5218144), with apparent retained intron.
U28424 - Human protein kinase inhibitor p58 mRNA, complete cds.
KJ901665 - Synthetic construct Homo sapiens clone ccsbBroadEn_11059 DNAJC3 gene, encodes complete protein.
CU690538 - Synthetic construct Homo sapiens gateway clone IMAGE:100021448 5' read DNAJC3 mRNA.
AB384852 - Synthetic construct DNA, clone: pF1KB3766, Homo sapiens DNAJC3 gene for DnaJ homolog, subfamily C, member 3, complete cds, without stop codon, in Flexi system.
KJ891899 - Synthetic construct Homo sapiens clone ccsbBroadEn_01293 DNAJC3 gene, encodes complete protein.
MA620597 - JP 2018138019-A/192523: Polycomb-Associated Non-Coding RNAs.
DQ586220 - Homo sapiens piRNA piR-53332, complete sequence.
LF335664 - JP 2014500723-A/143167: Polycomb-Associated Non-Coding RNAs.
LF335665 - JP 2014500723-A/143168: Polycomb-Associated Non-Coding RNAs.
LF335666 - JP 2014500723-A/143169: Polycomb-Associated Non-Coding RNAs.
LF335667 - JP 2014500723-A/143170: Polycomb-Associated Non-Coding RNAs.
LF335669 - JP 2014500723-A/143172: Polycomb-Associated Non-Coding RNAs.
AF339773 - Homo sapiens clone IMAGE:132203, mRNA sequence.
LF335670 - JP 2014500723-A/143173: Polycomb-Associated Non-Coding RNAs.
JD095681 - Sequence 76705 from Patent EP1572962.
LF335671 - JP 2014500723-A/143174: Polycomb-Associated Non-Coding RNAs.
JD346125 - Sequence 327149 from Patent EP1572962.
JD313049 - Sequence 294073 from Patent EP1572962.
JD090861 - Sequence 71885 from Patent EP1572962.
JD037914 - Sequence 18938 from Patent EP1572962.
JD526367 - Sequence 507391 from Patent EP1572962.
JD362433 - Sequence 343457 from Patent EP1572962.
JD355491 - Sequence 336515 from Patent EP1572962.
LF335672 - JP 2014500723-A/143175: Polycomb-Associated Non-Coding RNAs.
JD290884 - Sequence 271908 from Patent EP1572962.
JD490488 - Sequence 471512 from Patent EP1572962.
LF335673 - JP 2014500723-A/143176: Polycomb-Associated Non-Coding RNAs.
LF335674 - JP 2014500723-A/143177: Polycomb-Associated Non-Coding RNAs.
AK024941 - Homo sapiens cDNA: FLJ21288 fis, clone COL01927.
AF339835 - Homo sapiens clone IMAGE:943037, mRNA sequence.
LF335675 - JP 2014500723-A/143178: Polycomb-Associated Non-Coding RNAs.
JD297371 - Sequence 278395 from Patent EP1572962.
DQ584124 - Homo sapiens piRNA piR-51236, complete sequence.
JD087764 - Sequence 68788 from Patent EP1572962.
LF335676 - JP 2014500723-A/143179: Polycomb-Associated Non-Coding RNAs.
JD106215 - Sequence 87239 from Patent EP1572962.
JD410984 - Sequence 392008 from Patent EP1572962.
JD090655 - Sequence 71679 from Patent EP1572962.
JD283850 - Sequence 264874 from Patent EP1572962.
JD062395 - Sequence 43419 from Patent EP1572962.
JD436687 - Sequence 417711 from Patent EP1572962.
JD510271 - Sequence 491295 from Patent EP1572962.
JD198597 - Sequence 179621 from Patent EP1572962.
JD153622 - Sequence 134646 from Patent EP1572962.
JD428338 - Sequence 409362 from Patent EP1572962.
JD081178 - Sequence 62202 from Patent EP1572962.
JD109558 - Sequence 90582 from Patent EP1572962.
JD105071 - Sequence 86095 from Patent EP1572962.
JD072092 - Sequence 53116 from Patent EP1572962.
JD203869 - Sequence 184893 from Patent EP1572962.
JD107643 - Sequence 88667 from Patent EP1572962.
JD334537 - Sequence 315561 from Patent EP1572962.
JD503760 - Sequence 484784 from Patent EP1572962.
JD073350 - Sequence 54374 from Patent EP1572962.
JD130631 - Sequence 111655 from Patent EP1572962.
JD522035 - Sequence 503059 from Patent EP1572962.
JD224841 - Sequence 205865 from Patent EP1572962.
JD172507 - Sequence 153531 from Patent EP1572962.
JD058723 - Sequence 39747 from Patent EP1572962.
JD564065 - Sequence 545089 from Patent EP1572962.
JD248046 - Sequence 229070 from Patent EP1572962.
JD496145 - Sequence 477169 from Patent EP1572962.
JD059324 - Sequence 40348 from Patent EP1572962.
JD531940 - Sequence 512964 from Patent EP1572962.
LF335677 - JP 2014500723-A/143180: Polycomb-Associated Non-Coding RNAs.
JD490601 - Sequence 471625 from Patent EP1572962.
LF335678 - JP 2014500723-A/143181: Polycomb-Associated Non-Coding RNAs.
JD471513 - Sequence 452537 from Patent EP1572962.
JD178524 - Sequence 159548 from Patent EP1572962.
LF335679 - JP 2014500723-A/143182: Polycomb-Associated Non-Coding RNAs.
MA571241 - JP 2018138019-A/143167: Polycomb-Associated Non-Coding RNAs.
MA571242 - JP 2018138019-A/143168: Polycomb-Associated Non-Coding RNAs.
MA571243 - JP 2018138019-A/143169: Polycomb-Associated Non-Coding RNAs.
MA571244 - JP 2018138019-A/143170: Polycomb-Associated Non-Coding RNAs.
MA571246 - JP 2018138019-A/143172: Polycomb-Associated Non-Coding RNAs.
MA571247 - JP 2018138019-A/143173: Polycomb-Associated Non-Coding RNAs.
MA571248 - JP 2018138019-A/143174: Polycomb-Associated Non-Coding RNAs.
MA571249 - JP 2018138019-A/143175: Polycomb-Associated Non-Coding RNAs.
MA571250 - JP 2018138019-A/143176: Polycomb-Associated Non-Coding RNAs.
MA571251 - JP 2018138019-A/143177: Polycomb-Associated Non-Coding RNAs.
MA571252 - JP 2018138019-A/143178: Polycomb-Associated Non-Coding RNAs.
MA571253 - JP 2018138019-A/143179: Polycomb-Associated Non-Coding RNAs.
MA571254 - JP 2018138019-A/143180: Polycomb-Associated Non-Coding RNAs.
MA571255 - JP 2018138019-A/143181: Polycomb-Associated Non-Coding RNAs.
MA571256 - JP 2018138019-A/143182: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_rnaPathway - Double Stranded RNA Induced Gene Expression

Reactome (by CSHL, EBI, and GO)

Protein Q13217 (Reactome details) participates in the following event(s):

R-HSA-6798751 Exocytosis of azurophil granule lumen proteins
R-HSA-8952289 FAM20C phosphorylates FAM20C substrates
R-HSA-381038 XBP1(S) activates chaperone genes
R-HSA-381070 IRE1alpha activates chaperones
R-HSA-6798695 Neutrophil degranulation
R-HSA-381426 Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
R-HSA-8957275 Post-translational protein phosphorylation
R-HSA-381119 Unfolded Protein Response (UPR)
R-HSA-168249 Innate Immune System
R-HSA-392499 Metabolism of proteins
R-HSA-597592 Post-translational protein modification
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: DNJC3_HUMAN, ENST00000602402.1, ENST00000602402.2, ENST00000602402.3, ENST00000602402.4, ENST00000602402.5, NM_006260, P58IPK, PRKRI, Q13217, Q86WT9, Q8N4N2, uc327gnv.1, uc327gnv.2
UCSC ID: ENST00000602402.6_4
RefSeq Accession: NM_006260.5
Protein: Q13217 (aka DNJC3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.