Human Gene DPT (ENST00000367817.4_7) from GENCODE V47lift37
  Description: dermatopontin (from RefSeq NM_001937.5)
Gencode Transcript: ENST00000367817.4_7
Gencode Gene: ENSG00000143196.5_10
Transcript (Including UTRs)
   Position: hg19 chr1:168,664,706-168,698,444 Size: 33,739 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr1:168,665,787-168,698,412 Size: 32,626 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:168,664,706-168,698,444)mRNA (may differ from genome)Protein (201 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DERM_HUMAN
DESCRIPTION: RecName: Full=Dermatopontin; AltName: Full=Tyrosine-rich acidic matrix protein; Short=TRAMP; Flags: Precursor;
FUNCTION: Seems to mediate adhesion by cell surface integrin binding. May serve as a communication link between the dermal fibroblast cell surface and its extracellular matrix environment. Enhances TGFB1 activity. Inhibits cell proliferation. Accelerates collagen fibril formation, and stabilizes collagen fibrils against low-temperature dissociation (By similarity).
SUBUNIT: Interacts with TGFB1, DCN and collagen (By similarity).
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix (By similarity).
TISSUE SPECIFICITY: Expressed in fibroblasts, heart, skeletal muscle, brain and pancreas. Expressed at an intermediate level in lung and kidney, and at a low level in liver and placenta. Expressed at a lower level in fibroblasts from hypertrophic scar lesional skin and in fibroblasts from patients with systemic sclerosis than in normal skin fibroblasts.
INDUCTION: Induced by TGFB1, repressed by IL4/interleukin-4.
PTM: Sulfated on tyrosine residue(s) (By similarity).
SIMILARITY: Belongs to the dermatopontin family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DPT
Diseases sorted by gene-association score: commensal bacterial infectious disease (19), tetanus neonatorum (18), anisometropia (17), cycloplegia (17), eye accommodation disease (17), aniseikonia (16), paralytic poliomyelitis (12), poliomyelitis (11), tungiasis (11), renal artery obstruction (10), regular astigmatism (9), ametropic amblyopia (9), leiomyoma (8), preretinal fibrosis (7), brachial plexus neuritis (7), primary bacterial infectious disease (6), disuse amblyopia (6), astigmatism (6), chickenpox (5), suppression amblyopia (5), amblyopia (5), vestibular nystagmus (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 248.77 RPKM in Colon - Sigmoid
Total median expression: 2117.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.7032-0.147 Picture PostScript Text
3' UTR -346.301081-0.320 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026645 - Dermatopontin_fam

Pfam Domains:
PF14704 - Dermatopontin

SCOP Domains:
56300 - Metallo-dependent phosphatases

ModBase Predicted Comparative 3D Structure on Q07507
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0007155 cell adhesion
GO:0008285 negative regulation of cell proliferation
GO:0030199 collagen fibril organization

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0031012 extracellular matrix


-  Descriptions from all associated GenBank mRNAs
  LF205431 - JP 2014500723-A/12934: Polycomb-Associated Non-Coding RNAs.
BC021212 - Homo sapiens dermatopontin, mRNA (cDNA clone IMAGE:4136044), **** WARNING: chimeric clone ****.
BC033736 - Homo sapiens dermatopontin, mRNA (cDNA clone MGC:45278 IMAGE:5176855), complete cds.
AK292596 - Homo sapiens cDNA FLJ75811 complete cds, highly similar to Homo sapiens dermatopontin (DPT), mRNA.
Z22865 - H.sapiens dermatopontin mRNA, complete CDS.
DQ892055 - Synthetic construct clone IMAGE:100004685; FLH182750.01X; RZPDo839B10140D dermatopontin (DPT) gene, encodes complete protein.
DQ895249 - Synthetic construct Homo sapiens clone IMAGE:100009709; FLH182746.01L; RZPDo839B10139D dermatopontin (DPT) gene, encodes complete protein.
MA441008 - JP 2018138019-A/12934: Polycomb-Associated Non-Coding RNAs.
AL049455 - Homo sapiens mRNA; cDNA DKFZp586D2322 (from clone DKFZp586D2322).
AF086330 - Homo sapiens full length insert cDNA clone ZD54C09.
LF320449 - JP 2014500723-A/127952: Polycomb-Associated Non-Coding RNAs.
LF320448 - JP 2014500723-A/127951: Polycomb-Associated Non-Coding RNAs.
LF320447 - JP 2014500723-A/127950: Polycomb-Associated Non-Coding RNAs.
LF320446 - JP 2014500723-A/127949: Polycomb-Associated Non-Coding RNAs.
MA556026 - JP 2018138019-A/127952: Polycomb-Associated Non-Coding RNAs.
MA556025 - JP 2018138019-A/127951: Polycomb-Associated Non-Coding RNAs.
MA556024 - JP 2018138019-A/127950: Polycomb-Associated Non-Coding RNAs.
MA556023 - JP 2018138019-A/127949: Polycomb-Associated Non-Coding RNAs.
LF320445 - JP 2014500723-A/127948: Polycomb-Associated Non-Coding RNAs.
LF320444 - JP 2014500723-A/127947: Polycomb-Associated Non-Coding RNAs.
MA556022 - JP 2018138019-A/127948: Polycomb-Associated Non-Coding RNAs.
MA556021 - JP 2018138019-A/127947: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K981, DERM_HUMAN, ENST00000367817.1, ENST00000367817.2, ENST00000367817.3, NM_001937, Q07507, Q8N4R2, Q9UIX8, uc318gfm.1, uc318gfm.2
UCSC ID: ENST00000367817.4_7
RefSeq Accession: NM_001937.5
Protein: Q07507 (aka DERM_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.