Human Gene DSG2 (ENST00000261590.13_4) from GENCODE V47lift37
  Description: desmoglein 2 (from RefSeq NM_001943.5)
Gencode Transcript: ENST00000261590.13_4
Gencode Gene: ENSG00000046604.15_9
Transcript (Including UTRs)
   Position: hg19 chr18:29,078,140-29,128,971 Size: 50,832 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr18:29,078,215-29,126,706 Size: 48,492 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:29,078,140-29,128,971)mRNA (may differ from genome)Protein (1118 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DSG2_HUMAN
DESCRIPTION: RecName: Full=Desmoglein-2; AltName: Full=Cadherin family member 5; AltName: Full=HDGC; Flags: Precursor;
FUNCTION: Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein. Cell junction, desmosome.
TISSUE SPECIFICITY: All of the tissues tested and carcinomas.
DOMAIN: Calcium may be bound by the cadherin-like repeats (Potential).
DISEASE: Defects in DSG2 are the cause of familial arrhythmogenic right ventricular dysplasia type 10 (ARVD10) [MIM:610193]; also known as arrhythmogenic right ventricular cardiomyopathy 10 (ARVC10). ARVD is an autosomal dominant disease characterized by partial degeneration of the myocardium of the right ventricle, electrical instability, and sudden death. It is clinically defined by electrocardiographic and angiographic criteria; pathologic findings, replacement of ventricular myocardium with fatty and fibrous elements, preferentially involve the right ventricular free wall.
DISEASE: Genetic variations in DSG2 are the cause of susceptibility to cardiomyopathy dilated type 1BB (CMD1BB) [MIM:612877]. A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death.
SIMILARITY: Contains 4 cadherin domains.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/DSG2";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DSG2
Diseases sorted by gene-association score: arrhythmogenic right ventricular dysplasia 10* (1225), cardiomyopathy, dilated, 1bb* (544), cardiomyopathy* (164), atrial standstill, digenic* (133), dsg2-related dilated cardiomyopathy* (125), familial isolated arrhythmogenic ventricular dysplasia, right dominant form* (117), familial isolated arrhythmogenic ventricular dysplasia, biventricular form* (117), familial isolated arrhythmogenic ventricular dysplasia, left dominant form* (117), arrhythmogenic right ventricular dysplasia/cardiomyopathy10* (100), familial isolated dilated cardiomyopathy* (63), arrhythmogenic right ventricular cardiomyopathy (34), ventricular tachycardia, catecholaminergic polymorphic, 1 (18), pemphigus vulgaris (12), pemphigus (9), pemphigus foliaceus (7), hidradenitis suppurativa (7), hidradenitis (7), ritter's disease (6), paraneoplastic pemphigus (6), intrinsic cardiomyopathy (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 31.10 RPKM in Colon - Transverse
Total median expression: 221.48 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.2075-0.416 Picture PostScript Text
3' UTR -549.002265-0.242 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002126 - Cadherin
IPR015919 - Cadherin-like
IPR020894 - Cadherin_CS
IPR000233 - Cadherin_cytoplasmic-dom
IPR009122 - Desmo_cadherin
IPR009123 - Desmoglein

Pfam Domains:
PF00028 - Cadherin domain

SCOP Domains:
49313 - Cadherin-like
54768 - dsRNA-binding domain-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2YQG - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q14126
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005509 calcium ion binding
GO:0046872 metal ion binding
GO:0050839 cell adhesion molecule binding
GO:0086083 cell adhesive protein binding involved in bundle of His cell-Purkinje myocyte communication

Biological Process:
GO:0002934 desmosome organization
GO:0003165 Purkinje myocyte development
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
GO:0031424 keratinization
GO:0032570 response to progesterone
GO:0060135 maternal process involved in female pregnancy
GO:0070268 cornification
GO:0086073 bundle of His cell-Purkinje myocyte adhesion involved in cell communication
GO:0086091 regulation of heart rate by cardiac conduction
GO:0098911 regulation of ventricular cardiac muscle cell action potential

Cellular Component:
GO:0001533 cornified envelope
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0009986 cell surface
GO:0014704 intercalated disc
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016324 apical plasma membrane
GO:0016328 lateral plasma membrane
GO:0030054 cell junction
GO:0030057 desmosome
GO:0043231 intracellular membrane-bounded organelle
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC099655 - Homo sapiens desmoglein 2, mRNA (cDNA clone MGC:117034 IMAGE:40008691), complete cds.
BC099656 - Homo sapiens desmoglein 2, mRNA (cDNA clone MGC:117036 IMAGE:40008693), complete cds.
BC099657 - Homo sapiens desmoglein 2, mRNA (cDNA clone MGC:117037 IMAGE:40008694), complete cds.
Z26317 - H.sapiens mRNA for desmoglein 2.
AK308408 - Homo sapiens cDNA, FLJ98356.
BC071764 - Homo sapiens cDNA clone IMAGE:3838837, partial cds.
JD053230 - Sequence 34254 from Patent EP1572962.
BC022413 - Homo sapiens, clone IMAGE:4242700, mRNA.
BC020685 - Homo sapiens, clone IMAGE:4720557, mRNA.
JD027366 - Sequence 8390 from Patent EP1572962.
BC014581 - Homo sapiens, clone IMAGE:3932276, mRNA.
JD034410 - Sequence 15434 from Patent EP1572962.
JD025804 - Sequence 6828 from Patent EP1572962.
JD031465 - Sequence 12489 from Patent EP1572962.
BC014584 - Homo sapiens, clone IMAGE:4047062, mRNA.
JD409678 - Sequence 390702 from Patent EP1572962.
JD100887 - Sequence 81911 from Patent EP1572962.
JD497613 - Sequence 478637 from Patent EP1572962.
JD404838 - Sequence 385862 from Patent EP1572962.
BC067229 - Homo sapiens cDNA clone IMAGE:3686796, partial cds.
BC065747 - Homo sapiens cDNA clone IMAGE:3827095, partial cds.
BC017410 - Homo sapiens, clone IMAGE:4333899, mRNA.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q14126 (Reactome details) participates in the following event(s):

R-HSA-351877 Caspase-mediated cleavage of Desmoglein 2
R-HSA-6809393 Keratin filaments bind cell-cell adhesion complexes
R-HSA-6814695 PERP binds desmosomes
R-HSA-8942224 Filaggrin binds Keratin tonofilament:Desmosome
R-HSA-351906 Apoptotic cleavage of cell adhesion proteins
R-HSA-111465 Apoptotic cleavage of cellular proteins
R-HSA-75153 Apoptotic execution phase
R-HSA-6805567 Keratinization
R-HSA-6809371 Formation of the cornified envelope
R-HSA-109581 Apoptosis
R-HSA-1266738 Developmental Biology
R-HSA-5357801 Programmed Cell Death

-  Other Names for This Gene
  Alternate Gene Symbols: CDHF5, DSG2_HUMAN, ENST00000261590.1, ENST00000261590.10, ENST00000261590.11, ENST00000261590.12, ENST00000261590.2, ENST00000261590.3, ENST00000261590.4, ENST00000261590.5, ENST00000261590.6, ENST00000261590.7, ENST00000261590.8, ENST00000261590.9, NM_001943, Q14126, Q4KKU6, uc317grj.1, uc317grj.2
UCSC ID: ENST00000261590.13_4
RefSeq Accession: NM_001943.5
Protein: Q14126 (aka DSG2_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene DSG2:
arvd (Arrhythmogenic Right Ventricular Cardiomyopathy Overview)
dcm-ov (Dilated Cardiomyopathy Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.