Human Gene DSP (ENST00000379802.8_10) from GENCODE V47lift37
  Description: desmoplakin, transcript variant 1 (from RefSeq NM_004415.4)
Gencode Transcript: ENST00000379802.8_10
Gencode Gene: ENSG00000096696.17_13
Transcript (Including UTRs)
   Position: hg19 chr6:7,541,904-7,586,947 Size: 45,044 Total Exon Count: 24 Strand: +
Coding Region
   Position: hg19 chr6:7,542,149-7,586,111 Size: 43,963 Coding Exon Count: 24 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:7,541,904-7,586,947)mRNA (may differ from genome)Protein (2871 aa)
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-  Comments and Description Text from UniProtKB
  ID: DESP_HUMAN
DESCRIPTION: RecName: Full=Desmoplakin; Short=DP; AltName: Full=250/210 kDa paraneoplastic pemphigus antigen;
FUNCTION: Major high molecular weight protein of desmosomes. Involved in the organization of the desmosomal cadherin- plakoglobin complexes into discrete plasma membrane domains and in the anchoring of intermediate filaments to the desmosomes.
SUBUNIT: Homodimer. Interacts with COL17A1 (via cytoplasmic region). Associates (via C-terminal) with KRT5-KRT14 (via rod region), KRT8-KRT18 and VIM intermediate filaments. Interacts with DSC2.
SUBCELLULAR LOCATION: Cell junction, desmosome. Cytoplasm, cytoskeleton. Note=Innermost portion of the desmosomal plaque. Colocalizes with epidermal KRT5-KRT14 and simple KRT8-KRT18 keratins and VIM intermediate filaments network.
TISSUE SPECIFICITY: Isoform DPI is apparently an obligate constituent of all desmosomes. Isoform DPII resides predominantly in tissues and cells of stratified origin.
DOMAIN: Its association with epidermal and simple keratins is dependent on the tertiary structure induced by heterodimerization of these intermediate filaments proteins and most likely involves recognition sites located in the rod domain of these keratins.
DOMAIN: The N-terminal region is required for localization to the desmosomal plaque and interacts with the N-terminal region of plakophilin 1.
DOMAIN: The three tandem plakin repeat regions in the C-terminus mediate binding to intermediate filaments.
PTM: Ser-2849 is probably phosphorylated by a cAMP-dependent protein kinase. Phosphorylation on Ser-2849 probably affects its association with epidermal, simple cytokeratins and VIM intermediate filaments.
PTM: Substrate of transglutaminase. Some glutamines and lysines are cross-linked to other desmoplakin molecules, to other proteins such as keratin, envoplakin, periplakin and involucrin, and to lipids like omega-hydroxyceramide.
DISEASE: Defects in DSP are the cause of palmoplantar keratoderma striate type 2 (SPPK2) [MIM:612908]; also known as keratosis palmoplantaris striata II. SPPK2 is characterized by skin thickening in the palms (linear pattern) and the soles (island- like pattern) and flexor aspect of the fingers. Abnormalities of the nails, the teeth and the hair are rarely present.
DISEASE: Defects in DSP are the cause of cardiomyopathy dilated with woolly hair and keratoderma (DCWHK) [MIM:605676]; also known as Carvajal syndrome or palmoplantar keratoderma with left ventricular cardiomyopathy and woolly hair. DCWHK is an autosomal recessive cardiocutaneous syndrome characterized by a generalized striate keratoderma particularly affecting the palmoplantar epidermis, woolly hair, and dilated left ventricular cardiomyopathy.
DISEASE: Defects in DSP are the cause of familial arrhythmogenic right ventricular dysplasia type 8 (ARVD8) [MIM:607450]; also known as arrhythmogenic right ventricular cardiomyopathy 8 (ARVC8). ARVD is an autosomal dominant disease characterized by partial degeneration of the myocardium of the right ventricle, electrical instability, and sudden death. It is clinically defined by electrocardiographic and angiographic criteria; pathologic findings, replacement of ventricular myocardium with fatty and fibrous elements, preferentially involve the right ventricular free wall.
DISEASE: Defects in DSP are the cause of skin fragility-woolly hair syndrome (SFWHS) [MIM:607655]. SFWHS is an autosomal recessive genodermatosis characterized by focal and diffuse palmoplantar keratoderma, hyperkeratotic plaques on the trunk and limbs, and woolly hair with varying degrees of alopecia.
DISEASE: Defects in DSP are the cause of epidermolysis bullosa lethal acantholytic (EBLA) [MIM:609638]. EBLA is characterized by severe fragility of skin and mucous membranes. The phenotype is lethal in the neonatal period because of immense transcutaneous fluid loss. Typical features include universal alopecia, neonatal teeth, and nail loss. Histopathology of the skin shows suprabasal clefting and acantholysis throughout the spinous layer, mimicking pemphigus.
SIMILARITY: Belongs to the plakin or cytolinker family.
SIMILARITY: Contains 17 plectin repeats.
SIMILARITY: Contains 1 SH3 domain.
SIMILARITY: Contains 6 spectrin repeats.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/DSP";
WEB RESOURCE: Name=Wikipedia; Note=Desmoplakin entry; URL="http://en.wikipedia.org/wiki/Desmoplakin";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DSP
Diseases sorted by gene-association score: skin fragility-woolly hair syndrome* (1703), cardiomyopathy, dilated, with woolly hair and keratoderma* (1381), epidermolysis bullosa, lethal acantholytic* (1369), arrhythmogenic right ventricular dysplasia 8* (1216), dilated cardiomyopathy with woolly hair, keratoderma, and tooth agenesis* (1200), keratosis palmoplantaris striata ii* (1000), sudden cardiac death* (408), skin fragility-woolly hair-palmoplantar keratoderma syndrome* (400), erythrokeratodermia-cardiomyopathy syndrome* (368), aortic valve disease 1* (283), cardiac conduction defect* (283), left ventricular outflow tract obstruction* (283), striate palmoplantar keratoderma* (261), erythroderma, congenital, with palmoplantar keratoderma, hypotrichosis, and hyper ige* (247), ventricular fibrillation, familial, 1* (231), aortic valve disease 2* (231), dilated cardiomyopathy* (143), familial isolated arrhythmogenic ventricular dysplasia, right dominant form* (111), familial isolated arrhythmogenic ventricular dysplasia, biventricular form* (111), familial isolated arrhythmogenic ventricular dysplasia, left dominant form* (111), arrhythmogenic right ventricular dysplasia/cardiomyopathy 8* (100), dsp-related ectodermal dysplasia/skin fragility syndrome* (100), erythema multiforme (34), pemphigus (33), pemphigus erythematosus (25), perineurioma (21), woolly hair syndrome (21), arrhythmogenic right ventricular cardiomyopathy (20), hailey-hailey disease (20), darier disease (19), grover's disease (19), pemphigus vulgaris (18), bullous pemphigoid (18), paraneoplastic pemphigus (17), naxos disease (17), epithelioid neurofibroma (16), ectodermal dysplasia/skin fragility syndrome (13), hair disease (13), cardiomyopathy (12), follicular dendritic cell sarcoma (12), palmoplantar keratosis (12), palmoplantar keratoderma and woolly hair (11), plexiform schwannoma (11), epidermolysis bullosa (11), tooth agenesis (10), alopecia (9), arrhythmogenic right ventricular dysplasia 9 (8), arrhythmogenic right ventricular dysplasia 1 (8), myocarditis (8), autoimmune disease of skin and connective tissue (7), cellular schwannoma (7), pulmonary fibrosis, idiopathic* (7), pemphigus foliaceus (6), bullous skin disease (6), lymphangiosarcoma (5), cardiomyopathy, dilated, 1e (4), heart disease (3), meningioma, familial (2), intrinsic cardiomyopathy (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 542.43 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 1837.71 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -82.00245-0.335 Picture PostScript Text
3' UTR -173.40836-0.207 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001101 - Plectin_repeat
IPR018159 - Spectrin/alpha-actinin

Pfam Domains:
PF00681 - Plectin repeat
PF17902 - SH3 domain
PF18373 - Spectrin like domain

SCOP Domains:
46966 - Spectrin repeat
75399 - Plakin repeat

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1LM5 - X-ray MuPIT 1LM7 - X-ray MuPIT 3R6N - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P15924
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0005080 protein kinase C binding
GO:0005198 structural molecule activity
GO:0005200 structural constituent of cytoskeleton
GO:0005515 protein binding
GO:0030674 protein binding, bridging
GO:0050839 cell adhesion molecule binding
GO:0086083 cell adhesive protein binding involved in bundle of His cell-Purkinje myocyte communication
GO:0097110 scaffold protein binding

Biological Process:
GO:0002934 desmosome organization
GO:0003223 ventricular compact myocardium morphogenesis
GO:0008544 epidermis development
GO:0018149 peptide cross-linking
GO:0030216 keratinocyte differentiation
GO:0031424 keratinization
GO:0034332 adherens junction organization
GO:0042060 wound healing
GO:0043312 neutrophil degranulation
GO:0043588 skin development
GO:0045104 intermediate filament cytoskeleton organization
GO:0045109 intermediate filament organization
GO:0070268 cornification
GO:0071896 protein localization to adherens junction
GO:0086073 bundle of His cell-Purkinje myocyte adhesion involved in cell communication
GO:0086091 regulation of heart rate by cardiac conduction
GO:0098609 cell-cell adhesion
GO:0098911 regulation of ventricular cardiac muscle cell action potential

Cellular Component:
GO:0001533 cornified envelope
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005882 intermediate filament
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0005916 fascia adherens
GO:0014704 intercalated disc
GO:0016020 membrane
GO:0016323 basolateral plasma membrane
GO:0030054 cell junction
GO:0030057 desmosome
GO:0070062 extracellular exosome
GO:0101003 ficolin-1-rich granule membrane


-  Descriptions from all associated GenBank mRNAs
  AB209992 - Homo sapiens mRNA for DSP variant protein, clone: bf04924.
AK301676 - Homo sapiens cDNA FLJ51487 partial cds, highly similar to Desmoplakin.
AK296756 - Homo sapiens cDNA FLJ53584 partial cds, highly similar to Desmoplakin.
M77830 - Homo sapiens desmoplakin I (DPI) mRNA, complete cds.
HM151899 - Homo sapiens desmoplakin Ia mRNA, complete cds, alternatively spliced.
BC140802 - Homo sapiens desmoplakin, mRNA (cDNA clone MGC:176479 IMAGE:9021670), complete cds.
BC144587 - Homo sapiens cDNA clone IMAGE:9053117, containing frame-shift errors.
AB621818 - Homo sapiens DSP mRNA for desmoplakin, partial cds, clone: HP08272-RBd85A01.
AK304182 - Homo sapiens cDNA FLJ61543 complete cds, highly similar to Desmoplakin.
JD115078 - Sequence 96102 from Patent EP1572962.
JD372321 - Sequence 353345 from Patent EP1572962.
JD127199 - Sequence 108223 from Patent EP1572962.
AB590109 - Synthetic construct DNA, clone: pFN21AB0007, Homo sapiens DSP gene for desmoplakin, without stop codon, in Flexi system.
J05211 - Human desmoplakin mRNA, 3' end.
DQ570640 - Homo sapiens piRNA piR-30752, complete sequence.
AK130229 - Homo sapiens cDNA FLJ26719 fis, clone PNC03379.
JD023634 - Sequence 4658 from Patent EP1572962.
JD029347 - Sequence 10371 from Patent EP1572962.
JD023525 - Sequence 4549 from Patent EP1572962.
JD032494 - Sequence 13518 from Patent EP1572962.
AF139065 - Homo sapiens desmoplakin I mRNA, partial cds.
JD023388 - Sequence 4412 from Patent EP1572962.
JD359179 - Sequence 340203 from Patent EP1572962.
JD274358 - Sequence 255382 from Patent EP1572962.
JD122469 - Sequence 103493 from Patent EP1572962.
JD377389 - Sequence 358413 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P15924 (Reactome details) participates in the following event(s):

R-HSA-201636 Caspase-mediated cleavage of Desmoplakin
R-HSA-6809393 Keratin filaments bind cell-cell adhesion complexes
R-HSA-6814695 PERP binds desmosomes
R-HSA-6800426 Exocytosis of ficolin-rich granule membrane proteins
R-HSA-8942224 Filaggrin binds Keratin tonofilament:Desmosome
R-HSA-351906 Apoptotic cleavage of cell adhesion proteins
R-HSA-6805567 Keratinization
R-HSA-6809371 Formation of the cornified envelope
R-HSA-6798695 Neutrophil degranulation
R-HSA-111465 Apoptotic cleavage of cellular proteins
R-HSA-1266738 Developmental Biology
R-HSA-168249 Innate Immune System
R-HSA-75153 Apoptotic execution phase
R-HSA-168256 Immune System
R-HSA-109581 Apoptosis
R-HSA-5357801 Programmed Cell Death

-  Other Names for This Gene
  Alternate Gene Symbols: B2RTT2, D7RX09, DESP_HUMAN, ENST00000379802.1, ENST00000379802.2, ENST00000379802.3, ENST00000379802.4, ENST00000379802.5, ENST00000379802.6, ENST00000379802.7, NM_004415, O75993, P15924, Q14189, Q9UHN4, uc318pes.1, uc318pes.2
UCSC ID: ENST00000379802.8_10
RefSeq Accession: NM_004415.4
Protein: P15924 (aka DESP_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene DSP:
arvd (Arrhythmogenic Right Ventricular Cardiomyopathy Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.