Human Gene DSPP (ENST00000651931.1_4) from GENCODE V47lift37
  Description: dentin sialophosphoprotein (from RefSeq NM_014208.3)
Gencode Transcript: ENST00000651931.1_4
Gencode Gene: ENSG00000152591.15_10
Transcript (Including UTRs)
   Position: hg19 chr4:88,529,681-88,538,025 Size: 8,345 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr4:88,532,061-88,537,720 Size: 5,660 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:88,529,681-88,538,025)mRNA (may differ from genome)Protein (1301 aa)
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UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DSPP_HUMAN
DESCRIPTION: RecName: Full=Dentin sialophosphoprotein; Contains: RecName: Full=Dentin phosphoprotein; AltName: Full=Dentin phosphophoryn; Short=DPP; Contains: RecName: Full=Dentin sialoprotein; Short=DSP; Flags: Precursor;
FUNCTION: DSP may be an important factor in dentinogenesis. DPP may bind high amount of calcium and facilitate initial mineralization of dentin matrix collagen as well as regulate the size and shape of the crystals.
SUBUNIT: Interacts with FBLN7 (By similarity).
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix.
TISSUE SPECIFICITY: Expressed in teeth. DPP is synthesized by odontoblast and transiently expressed by pre-ameloblasts.
PTM: DSP is glycosylated.
DISEASE: Defects in DSPP are the cause of deafness autosomal dominant type 39 with dentinogenesis imperfecta 1 (DFNA39/DGI1) [MIM:605594]. Affected individuals present DGI1 associated with early onset progressive sensorineural high-frequency hearing loss.
DISEASE: Defects in DSPP are the cause of dentinogenesis imperfecta type 1 (DGI1) [MIM:125490]; also known as dentinogenesis imperfecta Shields type 2 (DGI2). DGI1 is an autosomal dominant disorder in which both the primary and the permanent teeth are affected. It occurs with an incidence of 1:8000 live births. The teeth are amber and opalescent, the pulp chamber being obliterated by abnormal dentin. The enamel, although unaffected, tends to fracture, which makes dentin undergo rapid attrition, leading to shortening of the teeth.
DISEASE: Defects in DSPP are a cause of dentinogenesis imperfecta Shields type 3 (DGI3) [MIM:125500]. Patients with DGI3 do not have stigmata of osteogenesis imperfecta. The finding that a single defects in the DSPP gene causes both phenotypic patterns of DGI2 and DGI3 strongly supports the conclusion that these two disorders are not separate diseases but rather the phenotypic variation of a single genetic defect.
DISEASE: Defects in DSPP are the cause of dentin dysplasia type 2 (DTDP2) [MIM:125420]; also known as dentin dysplasia Shields type 2. DTDP2 is an autosomal dominant disorder in which mineralization of the dentine of the primary teeth is abnormal. On the basis of the phenotypic overlap between, and shared chromosomal location with DGI2 it has been proposed that DTDP2 and DGI2 are allelic. From the results of recent studies, it is clear that different types of mutations in DSPP lead to the two different phenotypes.

-  Primer design for this transcript
 

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DSPP
Diseases sorted by gene-association score: dentinogenesis imperfecta, shields type iii* (1670), dentin dysplasia, type ii* (1668), dentinogenesis imperfecta, shields type ii* (1329), deafness, autosomal dominant 39, with dentinogenesis* (930), dentinogenesis imperfecta type 2* (750), dentinogenesis imperfecta type 3* (400), dentin dysplasia, type i, with microdontia and misshapen teeth* (202), dentinogenesis imperfecta (84), dentin dysplasia (71), dentin sensitivity (29), tooth resorption (29), root caries (28), regional odontodysplasia (26), dentin caries (24), dental pulp necrosis (22), dental caries (22), pulp degeneration (17), pulpitis (17), vaginal discharge (16), odontoma (13), tooth erosion (12), osteogenesis imperfecta (12), dental pulp disease (11), hypophosphatasia (11), dental fluorosis (10), gingival recession (10), taurodontism (9), hypercementosis (9), dental pulp calcification (9), hypophosphatemia (7), teeth hard tissue disease (7), hypocalcified amelogenesis imperfecta (7), root resorption (6), ehlers-danlos syndrome, classic type (6), endometrial disease (6), periapical periodontitis (5), vaginal disease (5), osteogenesis imperfecta, type iv (4), aplasia of lacrimal and salivary glands (4), tooth agenesis (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.90120-0.149 Picture PostScript Text
3' UTR -51.50305-0.169 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q9NZW4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005201 extracellular matrix structural constituent
GO:0005509 calcium ion binding
GO:0005518 collagen binding

Biological Process:
GO:0001501 skeletal system development
GO:0001503 ossification
GO:0007275 multicellular organism development
GO:0030198 extracellular matrix organization
GO:0031214 biomineral tissue development
GO:1901329 regulation of odontoblast differentiation

Cellular Component:
GO:0005576 extracellular region
GO:0005737 cytoplasm
GO:0031012 extracellular matrix


-  Descriptions from all associated GenBank mRNAs
  JD288182 - Sequence 269206 from Patent EP1572962.
JD456294 - Sequence 437318 from Patent EP1572962.
AF094508 - Homo sapiens dentin phosphoryn mRNA, complete cds.
JD309229 - Sequence 290253 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NZW4 (Reactome details) participates in the following event(s):

R-HSA-4086132 Dentin phosphoprotein binds integrin alphaVbeta1
R-HSA-3000178 ECM proteoglycans
R-HSA-1474244 Extracellular matrix organization

-  Other Names for This Gene
  Alternate Gene Symbols: A8MUI0, DSPP_HUMAN, NM_014208, O95815, Q9NZW4, uc328tpy.1, uc328tpy.2
UCSC ID: ENST00000651931.1_4
RefSeq Accession: NM_014208.3
Protein: Q9NZW4 (aka DSPP_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene DSPP:
deafness-overview (Genetic Hearing Loss Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.