Human Gene DUSP26 (ENST00000256261.9_7) from GENCODE V47lift37
  Description: dual specificity phosphatase 26, transcript variant 1 (from RefSeq NM_024025.3)
Gencode Transcript: ENST00000256261.9_7
Gencode Gene: ENSG00000133878.9_13
Transcript (Including UTRs)
   Position: hg19 chr8:33,448,848-33,457,541 Size: 8,694 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr8:33,449,531-33,455,033 Size: 5,503 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:33,448,848-33,457,541)mRNA (may differ from genome)Protein (211 aa)
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DUS26_HUMAN
DESCRIPTION: RecName: Full=Dual specificity protein phosphatase 26; EC=3.1.3.16; EC=3.1.3.48; AltName: Full=Dual specificity phosphatase SKRP3; AltName: Full=Low-molecular-mass dual-specificity phosphatase 4; Short=DSP-4; Short=LDP-4; AltName: Full=Mitogen-activated protein kinase phosphatase 8; Short=MAP kinase phosphatase 8; Short=MKP-8; AltName: Full=Novel amplified gene in thyroid anaplastic cancer;
FUNCTION: Inactivates MAPK1 and MAPK3 which leads to dephosphorylation of heat shock factor protein 4 and a reduction in its DNA-binding activity. Inhibits MAP kinase p38 by dephosphorylating it and inhibits p38-mediated apoptosis in anaplastic thyroid cancer cells. Can also induce activation of MAP kinase p38 and c-Jun N-terminal kinase (JNK).
CATALYTIC ACTIVITY: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
CATALYTIC ACTIVITY: A phosphoprotein + H(2)O = a protein + phosphate.
SUBUNIT: Interacts with HSF4.
INTERACTION: P04637:TP53; NbExp=9; IntAct=EBI-2924519, EBI-366083;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Golgi apparatus.
TISSUE SPECIFICITY: Brain. In the brain it is expressed ubiquitously except in the hippocampus. Expressed in embryonal cancers (retinoblastoma, neuroepithilioma and neuroblastoma) and in anaplatic thyroid cancer.
SIMILARITY: Belongs to the protein-tyrosine phosphatase family. Non-receptor class dual specificity subfamily.
SIMILARITY: Contains 1 tyrosine-protein phosphatase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DUSP26
Diseases sorted by gene-association score: thyroid cancer (5), neuroblastoma (2), drug-induced mental disorder (1), drug psychosis (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 85.70 RPKM in Muscle - Skeletal
Total median expression: 678.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -186.60435-0.429 Picture PostScript Text
3' UTR -256.80683-0.376 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020417 - Atypical_DUSP
IPR020405 - Atypical_DUSP_famA
IPR000340 - Dual-sp_phosphatase_cat-dom
IPR020422 - Dual-sp_phosphatase_subgr_cat
IPR024950 - DUSP
IPR000387 - Tyr/Dual-specificity_Pase
IPR016130 - Tyr_Pase_AS

Pfam Domains:
PF00782 - Dual specificity phosphatase, catalytic domain

SCOP Domains:
51905 - FAD/NAD(P)-binding domain
52799 - (Phosphotyrosine protein) phosphatases II

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2E0T - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9BV47
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001102 RNA polymerase II activating transcription factor binding
GO:0002039 p53 binding
GO:0004647 phosphoserine phosphatase activity
GO:0004721 phosphoprotein phosphatase activity
GO:0004725 protein tyrosine phosphatase activity
GO:0005515 protein binding
GO:0008138 protein tyrosine/serine/threonine phosphatase activity
GO:0016787 hydrolase activity
GO:0016791 phosphatase activity

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006470 protein dephosphorylation
GO:0016311 dephosphorylation
GO:0035335 peptidyl-tyrosine dephosphorylation
GO:0044387 negative regulation of protein kinase activity by regulation of protein phosphorylation
GO:0045785 positive regulation of cell adhesion
GO:0070373 negative regulation of ERK1 and ERK2 cascade
GO:1902310 positive regulation of peptidyl-serine dephosphorylation

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC003115 - Homo sapiens dual specificity phosphatase 26 (putative), mRNA (cDNA clone IMAGE:3502718), complete cds.
AB237597 - Homo sapiens LDP-4 mRNA for low-molecular-mass dual-specificity phosphatase 4, complete cds.
BC067804 - Homo sapiens dual specificity phosphatase 26 (putative), mRNA (cDNA clone MGC:87268 IMAGE:5262839), complete cds.
AB103376 - Homo sapiens SKRP3 mRNA for dual-specificity phosphatase SKRP3, complete cds.
AY902194 - Homo sapiens mitogen-activated protein kinase phosphatase 8 mRNA, complete cds.
BC001613 - Homo sapiens dual specificity phosphatase 26 (putative), mRNA (cDNA clone MGC:1136 IMAGE:3535215), complete cds.
AB158288 - Homo sapiens NATA1 mRNA, complete cds.
AK055704 - Homo sapiens cDNA FLJ31142 fis, clone IMR322001317, weakly similar to Homo sapiens mRNA for protein phosphatase.
JD337037 - Sequence 318061 from Patent EP1572962.
JD317949 - Sequence 298973 from Patent EP1572962.
JD431471 - Sequence 412495 from Patent EP1572962.
JD223624 - Sequence 204648 from Patent EP1572962.
JD433972 - Sequence 414996 from Patent EP1572962.
JD182889 - Sequence 163913 from Patent EP1572962.
JD419369 - Sequence 400393 from Patent EP1572962.
JD456519 - Sequence 437543 from Patent EP1572962.
JD561482 - Sequence 542506 from Patent EP1572962.
JD468991 - Sequence 450015 from Patent EP1572962.
JD108295 - Sequence 89319 from Patent EP1572962.
JD384019 - Sequence 365043 from Patent EP1572962.
JD319939 - Sequence 300963 from Patent EP1572962.
JD154547 - Sequence 135571 from Patent EP1572962.
JD123856 - Sequence 104880 from Patent EP1572962.
JD416140 - Sequence 397164 from Patent EP1572962.
JD473024 - Sequence 454048 from Patent EP1572962.
JD309855 - Sequence 290879 from Patent EP1572962.
JD077935 - Sequence 58959 from Patent EP1572962.
JD462457 - Sequence 443481 from Patent EP1572962.
CU674786 - Synthetic construct Homo sapiens gateway clone IMAGE:100018021 5' read DUSP26 mRNA.
HQ447174 - Synthetic construct Homo sapiens clone IMAGE:100070465; CCSB003671_01 dual specificity phosphatase 26 (putative) (DUSP26) gene, encodes complete protein.
KJ894618 - Synthetic construct Homo sapiens clone ccsbBroadEn_04012 DUSP26 gene, encodes complete protein.
JD381431 - Sequence 362455 from Patent EP1572962.
JD156280 - Sequence 137304 from Patent EP1572962.
JD371104 - Sequence 352128 from Patent EP1572962.
JD040075 - Sequence 21099 from Patent EP1572962.
JD423388 - Sequence 404412 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: D3DSV8, DUS26_HUMAN, DUSP24, ENST00000256261.1, ENST00000256261.2, ENST00000256261.3, ENST00000256261.4, ENST00000256261.5, ENST00000256261.6, ENST00000256261.7, ENST00000256261.8, LDP4, MKP8, NATA1, NM_024025, Q9BTW0, Q9BV47, SKRP3, uc317ftz.1, uc317ftz.2
UCSC ID: ENST00000256261.9_7
RefSeq Accession: NM_024025.3
Protein: Q9BV47 (aka DUS26_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.