Human Gene EDNRB (ENST00000646607.2_10) from GENCODE V47lift37
  Description: endothelin receptor type B, transcript variant 3 (from RefSeq NM_001122659.3)
Gencode Transcript: ENST00000646607.2_10
Gencode Gene: ENSG00000136160.17_15
Transcript (Including UTRs)
   Position: hg19 chr13:78,469,622-78,492,966 Size: 23,345 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr13:78,472,335-78,492,708 Size: 20,374 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:78,469,622-78,492,966)mRNA (may differ from genome)Protein (442 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EDNRB_HUMAN
DESCRIPTION: RecName: Full=Endothelin B receptor; Short=ET-B; Short=ET-BR; AltName: Full=Endothelin receptor non-selective type; Flags: Precursor;
FUNCTION: Non-specific receptor for endothelin 1, 2, and 3. Mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expressed in placental stem villi vessels, but not in cultured placental villi smooth muscle cells.
PTM: Palmitoylation of Cys-402 was confirmed by the palmitoylation of Cys-402 in a deletion mutant lacking both Cys-403 and Cys-405.
DISEASE: Defects in EDNRB are a cause of Waardenburg syndrome type 4A (WS4A) [MIM:277580]; also known as Waardenburg-Shah syndrome. WS4A is characterized by the association of Waardenburg features (depigmentation and deafness) and the absence of enteric ganglia in the distal part of the intestine (Hirschsprung disease).
DISEASE: Defects in EDNRB are the cause of Hirschsprung disease type 2 (HSCR2) [MIM:600155]; also known as aganglionic megacolon (MGC). HSCR2 is a congenital disorder characterized by absence of enteric ganglia along a variable length of the intestine. It is the most common cause of congenital intestinal obstruction. Early symptoms range from complete acute neonatal obstruction, characterized by vomiting, abdominal distention and failure to pass stool, to chronic constipation in the older child.
DISEASE: Defects in EDNRB are the cause of ABCD syndrome (ABCDS) [MIM:600501]. ABCD syndrome is an autosomal recessive syndrome characterized by albinism, black lock at temporal occipital region, bilateral deafness, aganglionosis of the large intestine and total absence of neurocytes and nerve fibers in the small intestine.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family. Endothelin receptor subfamily. EDNRB sub-subfamily.
SEQUENCE CAUTION: Sequence=BAD92435.1; Type=Erroneous initiation;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/EDNRB";
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/ednrb/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EDNRB
Diseases sorted by gene-association score: waardenburg syndrome, type 4a* (1346), abcd syndrome* (934), hirschsprung disease 2* (913), waardenburg's syndrome* (280), waardenburg syndrome, type 2e, with or without neurologic involvement* (157), ednrb-related hirschsprung disease* (100), hirschsprung disease 1* (38), megacolon (20), ritter's disease (19), intestinal obstruction (18), acute poststreptococcal glomerulonephritis (17), scarlet fever (16), bullous impetigo (13), colonic disease (12), mowat-wilson syndrome (11), waardenburg syndrome type 4 (11), hepatopulmonary syndrome (10), toxic megacolon (9), pulmonary hypertension (8), central hypoventilation syndrome, congenital (8), constipation (8), multiple endocrine neoplasia iib (7), shprintzen-goldberg syndrome (6), impetigo (6), perinephritis (6), intestinal disease (6), coffin-lowry syndrome (6), radiation proctitis (6), commensal bacterial infectious disease (6), medullary thyroid carcinoma, familial (6), autonomic nervous system disease (5), cochlear disease (5), hypoparathyroidism-deafness-renal disease syndrome (4), heart disease (3), autosomal dominant polycystic kidney disease (3), oral cavity cancer (2), gastrointestinal system disease (1), hypertension, essential (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -102.20258-0.396 Picture PostScript Text
3' UTR -544.702713-0.201 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR000499 - Endthln_rcpt
IPR001112 - ETB_rcpt
IPR017452 - GPCR_Rhodpsn_supfam

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)
PF10320 - Serpentine type 7TM GPCR chemoreceptor Srsx
PF10328 - Serpentine type 7TM GPCR chemoreceptor Srx

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on P24530
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0004962 endothelin receptor activity
GO:0005515 protein binding
GO:0017046 peptide hormone binding
GO:0031702 type 1 angiotensin receptor binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001755 neural crest cell migration
GO:0001934 positive regulation of protein phosphorylation
GO:0006885 regulation of pH
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007194 negative regulation of adenylate cyclase activity
GO:0007200 phospholipase C-activating G-protein coupled receptor signaling pathway
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0007399 nervous system development
GO:0007422 peripheral nervous system development
GO:0007497 posterior midgut development
GO:0007568 aging
GO:0008217 regulation of blood pressure
GO:0008284 positive regulation of cell proliferation
GO:0014043 negative regulation of neuron maturation
GO:0014070 response to organic cyclic compound
GO:0014826 vein smooth muscle contraction
GO:0019233 sensory perception of pain
GO:0019722 calcium-mediated signaling
GO:0019934 cGMP-mediated signaling
GO:0030318 melanocyte differentiation
GO:0031620 regulation of fever generation
GO:0032269 negative regulation of cellular protein metabolic process
GO:0032496 response to lipopolysaccharide
GO:0035645 enteric smooth muscle cell differentiation
GO:0035810 positive regulation of urine volume
GO:0035815 positive regulation of renal sodium excretion
GO:0042045 epithelial fluid transport
GO:0042310 vasoconstriction
GO:0042311 vasodilation
GO:0043066 negative regulation of apoptotic process
GO:0043473 pigmentation
GO:0048066 developmental pigmentation
GO:0048246 macrophage chemotaxis
GO:0048265 response to pain
GO:0048484 enteric nervous system development
GO:0050678 regulation of epithelial cell proliferation
GO:0051930 regulation of sensory perception of pain
GO:0060406 positive regulation of penile erection
GO:0071222 cellular response to lipopolysaccharide
GO:0086100 endothelin receptor signaling pathway
GO:1990839 response to endothelin

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031965 nuclear membrane
GO:0045121 membrane raft


-  Descriptions from all associated GenBank mRNAs
  D90402 - Homo sapiens ETR mRNA for endothelin receptor, complete cds.
E07650 - cDNA encoding endothelin receptor,ETB-receptor.
S57283 - Homo sapiens endothelin ET-B receptor mRNA, complete cds.
AF308156 - Homo sapiens HERV-E LTR/leader long terminal repeat, complete sequence; and endothelin B receptor mRNA, partial cds.
AB209198 - Homo sapiens mRNA for endothelin receptor type B isoform 1 variant protein.
JD284235 - Sequence 265259 from Patent EP1572962.
JD307726 - Sequence 288750 from Patent EP1572962.
JD086515 - Sequence 67539 from Patent EP1572962.
JD314629 - Sequence 295653 from Patent EP1572962.
X99250 - H.sapiens mRNA for endothelin-B receptor splice variant.
JD046652 - Sequence 27676 from Patent EP1572962.
JD534176 - Sequence 515200 from Patent EP1572962.
JD224115 - Sequence 205139 from Patent EP1572962.
JD346018 - Sequence 327042 from Patent EP1572962.
JD304109 - Sequence 285133 from Patent EP1572962.
JD441582 - Sequence 422606 from Patent EP1572962.
JD445651 - Sequence 426675 from Patent EP1572962.
JD515991 - Sequence 497015 from Patent EP1572962.
JD358454 - Sequence 339478 from Patent EP1572962.
JD091428 - Sequence 72452 from Patent EP1572962.
S44866 - ETB endothelin receptor [human, mRNA, 1872 nt].
AK290699 - Homo sapiens cDNA FLJ75414 complete cds, highly similar to Homo sapiens endothelin receptor type B (EDNRB), transcript variant 1, mRNA.
L06623 - Homo sapiens endothelin receptor type B (EDNRB) mRNA, complete cds.
M74921 - Human endothelin receptor mRNA, complete cds.
AF114165 - Homo sapiens endothelin receptor B delta 3 mRNA, complete cds.
BC014472 - Homo sapiens endothelin receptor type B, mRNA (cDNA clone MGC:23118 IMAGE:4868863), complete cds.
AY275463 - Homo sapiens endothelin receptor type B (EDNRB) mRNA, complete cds.
KJ896744 - Synthetic construct Homo sapiens clone ccsbBroadEn_06138 EDNRB gene, encodes complete protein.
KR710540 - Synthetic construct Homo sapiens clone CCSBHm_00013923 EDNRB (EDNRB) mRNA, encodes complete protein.
KR710541 - Synthetic construct Homo sapiens clone CCSBHm_00013924 EDNRB (EDNRB) mRNA, encodes complete protein.
KR710542 - Synthetic construct Homo sapiens clone CCSBHm_00013937 EDNRB (EDNRB) mRNA, encodes complete protein.
KR710543 - Synthetic construct Homo sapiens clone CCSBHm_00013947 EDNRB (EDNRB) mRNA, encodes complete protein.
AB463025 - Synthetic construct DNA, clone: pF1KB3938, Homo sapiens EDNRB gene for endothelin receptor type B, without stop codon, in Flexi system.
CU677009 - Synthetic construct Homo sapiens gateway clone IMAGE:100023361 5' read EDNRB mRNA.
S75587 - ETB1=endothelin receptor subtype B1 {alternatively spliced} [human, brain, mRNA Partial, 51 nt].
KU257680 - Homo sapiens endothelin receptor type B mRNA, partial cds.
AF114163 - Homo sapiens endothelin receptor B delta 1 mRNA, 5' untranslated region.
AF114164 - Homo sapiens endothelin receptor B delta 2 mRNA, 5' untranslated region.
JD180514 - Sequence 161538 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_cardiacegfPathway - Role of EGF Receptor Transactivation by GPCRs in Cardiac Hypertrophy

Reactome (by CSHL, EBI, and GO)

Protein P24530 (Reactome details) participates in the following event(s):

R-HSA-388560 Endothelin receptors bind endothelin
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A2A2Z8, A8K3T4, EDNRB , EDNRB_HUMAN, ENST00000646607.1, ETRB, NM_001122659, O15343, P24530, Q59GB1, Q5W0G9, Q8NHM6, Q8NHM7, Q8NHM8, Q8NHM9, Q9UD23, Q9UQK3, uc328mro.1, uc328mro.2
UCSC ID: ENST00000646607.2_10
RefSeq Accession: NM_001122659.3
Protein: P24530 (aka EDNRB_HUMAN or ETBR_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.