Human Gene EEF2K (ENST00000263026.10_5) from GENCODE V47lift37
  Description: eukaryotic elongation factor 2 kinase (from RefSeq NM_013302.5)
Gencode Transcript: ENST00000263026.10_5
Gencode Gene: ENSG00000103319.12_8
Transcript (Including UTRs)
   Position: hg19 chr16:22,217,599-22,300,059 Size: 82,461 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr16:22,237,051-22,295,317 Size: 58,267 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:22,217,599-22,300,059)mRNA (may differ from genome)Protein (725 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EF2K_HUMAN
DESCRIPTION: RecName: Full=Eukaryotic elongation factor 2 kinase; Short=eEF-2 kinase; Short=eEF-2K; EC=2.7.11.20; AltName: Full=Calcium/calmodulin-dependent eukaryotic elongation factor 2 kinase;
FUNCTION: Threonine kinase that regulates protein synthesis by controlling the rate of peptide chain elongation. Upon activation by a variety of upstream kinases including AMPK or TRM7, phosphorylates the elongation factor EEF2 at a single site, renders it unable to bind ribosomes and thus inactive. In turn, the rate of protein synthesis is reduced.
CATALYTIC ACTIVITY: ATP + [elongation factor 2] = ADP + [elongation factor 2] phosphate.
ENZYME REGULATION: Undergoes calcium/calmodulin-dependent intramolecular autophosphorylation, and this results in it becoming partially calcium/calmodulin-independent (By similarity).
SUBUNIT: Monomer or homodimer (Potential).
DOMAIN: The catalytic domain is located to N-terminal region. The neighbor region contains the calmodulin-binding domain.
PTM: Autophosphorylated at multiple residues, Thr-348 being the major site. Phosphorylated by AMP-activated protein kinase AMPK at Ser-398 leading to EEF2K activation and protein synthesis inhibition. Phosphorylated by TRPM7 at Ser-78 resulting in improved protein stability, higher EE2F phosphorylated and subsequently reduced rate of protein synthesis. Phosphorylation by other kinases such as CDK1 and MAPK13 at Ser-359 or RPS6KA1 and RPS6KB1 at Ser-366 instead decrease EEF2K activity and promote protein synthesis.
SIMILARITY: Belongs to the protein kinase superfamily. Alpha-type protein kinase family.
SIMILARITY: Contains 1 alpha-type protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EEF2K
Diseases sorted by gene-association score: anoxia (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 37.13 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 479.87 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -195.80478-0.410 Picture PostScript Text
3' UTR -1698.304742-0.358 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017400 - Elongation_factor_2_kinase
IPR011009 - Kinase-like_dom
IPR004166 - MHCK_EF2_kinase
IPR006597 - Sel1-like
IPR011990 - TPR-like_helical

Pfam Domains:
PF02816 - Alpha-kinase family
PF08238 - Sel1 repeat

SCOP Domains:
81901 - HCP-like
46785 - "Winged helix" DNA-binding domain
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on O00418
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004686 elongation factor-2 kinase activity
GO:0005509 calcium ion binding
GO:0005516 calmodulin binding
GO:0005524 ATP binding
GO:0008135 translation factor activity, RNA binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0002931 response to ischemia
GO:0006414 translational elongation
GO:0006468 protein phosphorylation
GO:0016310 phosphorylation
GO:0031952 regulation of protein autophosphorylation
GO:0032869 cellular response to insulin stimulus
GO:0043066 negative regulation of apoptotic process
GO:0045807 positive regulation of endocytosis
GO:0046777 protein autophosphorylation
GO:0051965 positive regulation of synapse assembly
GO:0061003 positive regulation of dendritic spine morphogenesis
GO:0071277 cellular response to calcium ion
GO:0071320 cellular response to cAMP
GO:0071454 cellular response to anoxia
GO:1990416 cellular response to brain-derived neurotrophic factor stimulus
GO:1990637 response to prolactin

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0014069 postsynaptic density
GO:0043197 dendritic spine


-  Descriptions from all associated GenBank mRNAs
  BC032665 - Homo sapiens eukaryotic elongation factor-2 kinase, mRNA (cDNA clone MGC:45041 IMAGE:5553055), complete cds.
AB527283 - Synthetic construct DNA, clone: pF1KB5588, Homo sapiens EEF2K gene for eukaryotic elongation factor-2 kinase, without stop codon, in Flexi system.
DQ894050 - Synthetic construct Homo sapiens clone IMAGE:100008510; FLH166891.01L; RZPDo839E0987D eukaryotic elongation factor-2 kinase (EEF2K) gene, encodes complete protein.
DQ890896 - Synthetic construct clone IMAGE:100003526; FLH166895.01X; RZPDo839E0988D eukaryotic elongation factor-2 kinase (EEF2K) gene, encodes complete protein.
KJ898741 - Synthetic construct Homo sapiens clone ccsbBroadEn_08135 EEF2K gene, encodes complete protein.
KJ905461 - Synthetic construct Homo sapiens clone ccsbBroadEn_15051 EEF2K gene, encodes complete protein.
U93850 - Homo sapiens elongation factor-2 kinase mRNA, complete cds.
AK308757 - Homo sapiens cDNA, FLJ98798.
JD419282 - Sequence 400306 from Patent EP1572962.
CU689470 - Synthetic construct Homo sapiens gateway clone IMAGE:100017787 5' read EEF2K mRNA.
AK022569 - Homo sapiens cDNA FLJ12507 fis, clone NT2RM2001706.
JD303268 - Sequence 284292 from Patent EP1572962.
JD039251 - Sequence 20275 from Patent EP1572962.
JD552563 - Sequence 533587 from Patent EP1572962.
JD433726 - Sequence 414750 from Patent EP1572962.
JD541222 - Sequence 522246 from Patent EP1572962.
JD453941 - Sequence 434965 from Patent EP1572962.
JD072397 - Sequence 53421 from Patent EP1572962.
JD207733 - Sequence 188757 from Patent EP1572962.
JD356862 - Sequence 337886 from Patent EP1572962.
JD108114 - Sequence 89138 from Patent EP1572962.
JD342219 - Sequence 323243 from Patent EP1572962.
JD222253 - Sequence 203277 from Patent EP1572962.
JD220333 - Sequence 201357 from Patent EP1572962.
JD089541 - Sequence 70565 from Patent EP1572962.
JD397923 - Sequence 378947 from Patent EP1572962.
JD515790 - Sequence 496814 from Patent EP1572962.
JD080196 - Sequence 61220 from Patent EP1572962.
JD310553 - Sequence 291577 from Patent EP1572962.
JD336648 - Sequence 317672 from Patent EP1572962.
JD277511 - Sequence 258535 from Patent EP1572962.
JD091483 - Sequence 72507 from Patent EP1572962.
JD505192 - Sequence 486216 from Patent EP1572962.
JD501192 - Sequence 482216 from Patent EP1572962.
JD054015 - Sequence 35039 from Patent EP1572962.
JD404223 - Sequence 385247 from Patent EP1572962.
JD508399 - Sequence 489423 from Patent EP1572962.
JD070763 - Sequence 51787 from Patent EP1572962.
JD344727 - Sequence 325751 from Patent EP1572962.
JD073083 - Sequence 54107 from Patent EP1572962.
JD138450 - Sequence 119474 from Patent EP1572962.
JD138451 - Sequence 119475 from Patent EP1572962.
JD176510 - Sequence 157534 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_eifPathway - Eukaryotic protein translation

Reactome (by CSHL, EBI, and GO)

Protein O00418 (Reactome details) participates in the following event(s):

R-HSA-165758 Phosphorylation and inactivation of eEF2K by activated S6K1
R-HSA-166208 mTORC1-mediated signalling
R-HSA-165159 mTOR signalling
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: EF2K_HUMAN, ENST00000263026.1, ENST00000263026.2, ENST00000263026.3, ENST00000263026.4, ENST00000263026.5, ENST00000263026.6, ENST00000263026.7, ENST00000263026.8, ENST00000263026.9, NM_013302, O00418, Q8N588, uc317hfs.1, uc317hfs.2
UCSC ID: ENST00000263026.10_5
RefSeq Accession: NM_013302.5
Protein: O00418 (aka EF2K_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.