Human Gene EID2 (ENST00000390658.4_7) from GENCODE V47lift37
  Description: EP300 interacting inhibitor of differentiation 2 (from RefSeq NM_153232.4)
Gencode Transcript: ENST00000390658.4_7
Gencode Gene: ENSG00000176396.11_9
Transcript (Including UTRs)
   Position: hg19 chr19:40,029,347-40,030,801 Size: 1,455 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr19:40,030,009-40,030,719 Size: 711 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:40,029,347-40,030,801)mRNA (may differ from genome)Protein (236 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EID2_HUMAN
DESCRIPTION: RecName: Full=EP300-interacting inhibitor of differentiation 2; Short=EID-2; AltName: Full=CREBBP/EP300 inhibitor 2; AltName: Full=EID-1-like inhibitor of differentiation 2;
FUNCTION: Interacts with EP300 and acts as a repressor of MYOD- dependent transcription and muscle differentiation. Inhibits EP300 histone acetyltransferase activity. Acts as a repressor of TGFB/SMAD transcriptional responses. May act as a repressor of the TGFB/SMAD3-dependent signaling by selectively blocking formation of TGFB-induced SMAD3-SMAD4 complex.
SUBUNIT: Heterodimer with EID2B. Interacts with the C-terminus of EP300. Interacts with HDAC1 and HDAC2. Interacts with SMAD2, SMAD4 and with the MH2 domain of SMAD3.
INTERACTION: Q8N140:EID3; NbExp=3; IntAct=EBI-5525894, EBI-744483;
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Most abundantly expressed in placenta. Highly expressed in liver, brain, heart, skeletal muscle, and kidney.
DOMAIN: The N-terminal portion of EID2 is required for nuclear localization.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.09 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 332.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.2082-0.356 Picture PostScript Text
3' UTR -126.90662-0.192 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q8N6I1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0046332 SMAD binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007181 transforming growth factor beta receptor complex assembly
GO:0007183 SMAD protein complex assembly
GO:0007275 multicellular organism development
GO:0007517 muscle organ development
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway
GO:0030154 cell differentiation
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway
GO:0042127 regulation of cell proliferation
GO:0045892 negative regulation of transcription, DNA-templated

Cellular Component:
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005654 nucleoplasm


-  Descriptions from all associated GenBank mRNAs
  BC099899 - Homo sapiens EP300 interacting inhibitor of differentiation 2, mRNA (cDNA clone IMAGE:6157817), partial cds.
BC030137 - Homo sapiens EP300 interacting inhibitor of differentiation 2, mRNA (cDNA clone MGC:20452 IMAGE:3945641), complete cds.
AK128468 - Homo sapiens cDNA FLJ46611 fis, clone TKIDN2010602.
AY251272 - Homo sapiens EID2 mRNA, complete cds.
BC071854 - Homo sapiens EP300 interacting inhibitor of differentiation 2, mRNA (cDNA clone IMAGE:6645538), partial cds.
JD548213 - Sequence 529237 from Patent EP1572962.
JD538976 - Sequence 520000 from Patent EP1572962.
JD462709 - Sequence 443733 from Patent EP1572962.
JD143201 - Sequence 124225 from Patent EP1572962.
JD058174 - Sequence 39198 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A7YQ71, CRI2 , EID2 , EID2_HUMAN, ENST00000390658.1, ENST00000390658.2, ENST00000390658.3, NM_153232, Q6X7T0, Q6ZR61, Q8N6I1, uc318txn.1, uc318txn.2
UCSC ID: ENST00000390658.4_7
RefSeq Accession: NM_153232.4
Protein: Q8N6I1 (aka EID2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.