Human Gene EIF2AK3 (ENST00000303236.9_8) from GENCODE V47lift37
  Description: eukaryotic translation initiation factor 2 alpha kinase 3, transcript variant 1 (from RefSeq NM_004836.7)
Gencode Transcript: ENST00000303236.9_8
Gencode Gene: ENSG00000172071.15_14
Transcript (Including UTRs)
   Position: hg19 chr2:88,856,259-88,926,982 Size: 70,724 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr2:88,857,254-88,926,792 Size: 69,539 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:88,856,259-88,926,982)mRNA (may differ from genome)Protein (1116 aa)
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: E2AK3_HUMAN
DESCRIPTION: RecName: Full=Eukaryotic translation initiation factor 2-alpha kinase 3; EC=2.7.11.1; AltName: Full=PRKR-like endoplasmic reticulum kinase; AltName: Full=Pancreatic eIF2-alpha kinase; Short=HsPEK; Flags: Precursor;
FUNCTION: Phosphorylates the alpha subunit of eukaryotic translation-initiation factor 2 (EIF2), leading to its inactivation and thus to a rapid reduction of translational initiation and repression of global protein synthesis. Serves as a critical effector of unfolded protein response (UPR)-induced G1 growth arrest due to the loss of cyclin-D1 (CCND1) (By similarity).
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Perturbation in protein folding in the endoplasmic reticulum (ER) promotes reversible dissociation from HSPA5/BIP and oligomerization, resulting in transautophosphorylation and kinase activity induction (By similarity).
SUBUNIT: Forms dimers with HSPA5/BIP in resting cells. Oligomerizes in ER-stressed cells. Interacts with DNAJC3 (By similarity).
INTERACTION: Self; NbExp=2; IntAct=EBI-766076, EBI-766076;
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Ubiquitous. A high level expression is seen in secretory tissues.
INDUCTION: By endoplasmic reticulum stress.
DOMAIN: The lumenal domain senses perturbations in protein folding in the ER, probably through reversible interaction with HSPA5/BIP (By similarity).
PTM: Oligomerization of the N-terminal ER luminal domain by ER stress promotes PERK trans-autophosphorylation of the C-terminal cytoplasmic kinase domain at multiple residues including Thr-982 on the kinase activation loop (By similarity). Autophosphorylated. Phosphorylated at Tyr-619 following endoplasmic reticulum stress, leading to activate its tyrosine-protein kinase activity. Dephosphorylated by PTPN1/TP1B, leading to inactivate its enzyme activity.
PTM: N-glycosylated (By similarity).
DISEASE: Defects in EIF2AK3 are the cause of Wolcott-Rallison syndrome (WRS) [MIM:226980]; also known as multiple epiphyseal dysplasia with early-onset diabetes mellitus. WRS is a rare autosomal recessive disorder, characterized by permanent neonatal or early infancy insulin-dependent diabetes and, at a later age, epiphyseal dysplasia, osteoporosis, growth retardation and other multisystem manifestations, such as hepatic and renal dysfunctions, mental retardation and cardiovascular abnormalities.
SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. GCN2 subfamily.
SIMILARITY: Contains 1 protein kinase domain.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/EIF2AK3";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EIF2AK3
Diseases sorted by gene-association score: wolcott-rallison syndrome* (1722), diversion colitis (14), neonatal diabetes mellitus (7), diabetes mellitus, permanent neonatal (6), vulvar melanoma (5), acneiform dermatitis (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.28 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 283.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -90.30190-0.475 Picture PostScript Text
3' UTR -227.90995-0.229 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR011047 - Quinonprotein_ADH-like
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
50960 - TolB, C-terminal domain
63829 - Calcium-dependent phosphotriesterase
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50978 - WD40 repeat-like
50998 - Quinoprotein alcohol dehydrogenase-like
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
4G31 - X-ray MuPIT 4G34 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9NZJ5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004694 eukaryotic translation initiation factor 2alpha kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019899 enzyme binding
GO:0019903 protein phosphatase binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0051879 Hsp90 protein binding

Biological Process:
GO:0001501 skeletal system development
GO:0001503 ossification
GO:0001525 angiogenesis
GO:0002063 chondrocyte development
GO:0006417 regulation of translation
GO:0006468 protein phosphorylation
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006983 ER overload response
GO:0006986 response to unfolded protein
GO:0007029 endoplasmic reticulum organization
GO:0010575 positive regulation of vascular endothelial growth factor production
GO:0010628 positive regulation of gene expression
GO:0010998 regulation of translational initiation by eIF2 alpha phosphorylation
GO:0016310 phosphorylation
GO:0017148 negative regulation of translation
GO:0018105 peptidyl-serine phosphorylation
GO:0019722 calcium-mediated signaling
GO:0030282 bone mineralization
GO:0030968 endoplasmic reticulum unfolded protein response
GO:0031018 endocrine pancreas development
GO:0031642 negative regulation of myelination
GO:0032055 negative regulation of translation in response to stress
GO:0032057 negative regulation of translational initiation in response to stress
GO:0034198 cellular response to amino acid starvation
GO:0034976 response to endoplasmic reticulum stress
GO:0036492 eiF2alpha phosphorylation in response to endoplasmic reticulum stress
GO:0036499 PERK-mediated unfolded protein response
GO:0042149 cellular response to glucose starvation
GO:0045943 positive regulation of transcription from RNA polymerase I promoter
GO:0046777 protein autophosphorylation
GO:0048009 insulin-like growth factor receptor signaling pathway
GO:0051260 protein homooligomerization
GO:0060734 regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation
GO:0070417 cellular response to cold
GO:1900182 positive regulation of protein localization to nucleus
GO:1902235 regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:1990737 response to manganese-induced endoplasmic reticulum stress

Cellular Component:
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030176 integral component of endoplasmic reticulum membrane
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LF207182 - JP 2014500723-A/14685: Polycomb-Associated Non-Coding RNAs.
CR749382 - Homo sapiens mRNA; cDNA DKFZp781H1925 (from clone DKFZp781H1925).
AF193339 - Homo sapiens eukaryotic translation initiation factor 2 alpha kinase PEK mRNA, complete cds.
AK128659 - Homo sapiens cDNA FLJ46818 fis, clone TRACH3038399, highly similar to Eukaryotic translation initiation factor2-alpha kinase 3 precursor (EC 2.7.11.1).
AF110146 - Homo sapiens eukaryotic translation initiation factor 2 alpha kinase PEK mRNA, complete cds.
BC126354 - Homo sapiens eukaryotic translation initiation factor 2-alpha kinase 3, mRNA (cDNA clone MGC:161632 IMAGE:8992070), complete cds.
BC126356 - Homo sapiens eukaryotic translation initiation factor 2-alpha kinase 3, mRNA (cDNA clone MGC:161634 IMAGE:8992072), complete cds.
AK315287 - Homo sapiens cDNA, FLJ96302, highly similar to Homo sapiens eukaryotic translation initiation factor 2-alphakinase 3 (EIF2AK3), mRNA.
AK308312 - Homo sapiens cDNA, FLJ98260.
MA442759 - JP 2018138019-A/14685: Polycomb-Associated Non-Coding RNAs.
BC040505 - Homo sapiens cDNA clone IMAGE:5286123, with apparent retained intron.
JD559105 - Sequence 540129 from Patent EP1572962.
LF362784 - JP 2014500723-A/170287: Polycomb-Associated Non-Coding RNAs.
JD433672 - Sequence 414696 from Patent EP1572962.
JD564040 - Sequence 545064 from Patent EP1572962.
JD284720 - Sequence 265744 from Patent EP1572962.
JD532071 - Sequence 513095 from Patent EP1572962.
JD354362 - Sequence 335386 from Patent EP1572962.
JD130165 - Sequence 111189 from Patent EP1572962.
LF362783 - JP 2014500723-A/170286: Polycomb-Associated Non-Coding RNAs.
MA598361 - JP 2018138019-A/170287: Polycomb-Associated Non-Coding RNAs.
MA598360 - JP 2018138019-A/170286: Polycomb-Associated Non-Coding RNAs.
LF362782 - JP 2014500723-A/170285: Polycomb-Associated Non-Coding RNAs.
LF362781 - JP 2014500723-A/170284: Polycomb-Associated Non-Coding RNAs.
LF362778 - JP 2014500723-A/170281: Polycomb-Associated Non-Coding RNAs.
LF362777 - JP 2014500723-A/170280: Polycomb-Associated Non-Coding RNAs.
LF362776 - JP 2014500723-A/170279: Polycomb-Associated Non-Coding RNAs.
LF362775 - JP 2014500723-A/170278: Polycomb-Associated Non-Coding RNAs.
LF362774 - JP 2014500723-A/170277: Polycomb-Associated Non-Coding RNAs.
LF362773 - JP 2014500723-A/170276: Polycomb-Associated Non-Coding RNAs.
LF362772 - JP 2014500723-A/170275: Polycomb-Associated Non-Coding RNAs.
LF362771 - JP 2014500723-A/170274: Polycomb-Associated Non-Coding RNAs.
LF362770 - JP 2014500723-A/170273: Polycomb-Associated Non-Coding RNAs.
JD058191 - Sequence 39215 from Patent EP1572962.
JD145772 - Sequence 126796 from Patent EP1572962.
JD075926 - Sequence 56950 from Patent EP1572962.
MA598359 - JP 2018138019-A/170285: Polycomb-Associated Non-Coding RNAs.
MA598358 - JP 2018138019-A/170284: Polycomb-Associated Non-Coding RNAs.
MA598355 - JP 2018138019-A/170281: Polycomb-Associated Non-Coding RNAs.
MA598354 - JP 2018138019-A/170280: Polycomb-Associated Non-Coding RNAs.
MA598353 - JP 2018138019-A/170279: Polycomb-Associated Non-Coding RNAs.
MA598352 - JP 2018138019-A/170278: Polycomb-Associated Non-Coding RNAs.
MA598351 - JP 2018138019-A/170277: Polycomb-Associated Non-Coding RNAs.
MA598350 - JP 2018138019-A/170276: Polycomb-Associated Non-Coding RNAs.
MA598349 - JP 2018138019-A/170275: Polycomb-Associated Non-Coding RNAs.
MA598348 - JP 2018138019-A/170274: Polycomb-Associated Non-Coding RNAs.
MA598347 - JP 2018138019-A/170273: Polycomb-Associated Non-Coding RNAs.
MT012629 - Homo sapiens isolate UDWRS01 truncated eukaryotic translation initiation factor 2 alpha kinase 3 (EIF2AK3) mRNA, partial cds.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_eif2Pathway - Regulation of eIF2

Reactome (by CSHL, EBI, and GO)

Protein Q9NZJ5 (Reactome details) participates in the following event(s):

R-HSA-381087 Dimerization of PERK
R-HSA-381086 Dissociation of PERK:BiP Heterodimer
R-HSA-381111 Phosphorylation of eIF2-alpha by PERK
R-HSA-381042 PERK regulates gene expression
R-HSA-381119 Unfolded Protein Response (UPR)
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: A0AVH1, A0AVH2, B2RCU9, E2AK3_HUMAN, ENST00000303236.1, ENST00000303236.2, ENST00000303236.3, ENST00000303236.4, ENST00000303236.5, ENST00000303236.6, ENST00000303236.7, ENST00000303236.8, NM_004836, O95846, PEK, PERK, Q53QY0, Q53SB1, Q9NZJ5, uc317nez.1, uc317nez.2
UCSC ID: ENST00000303236.9_8
RefSeq Accession: NM_004836.7
Protein: Q9NZJ5 (aka E2AK3_HUMAN or E2K3_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene EIF2AK3:
dmn (Permanent Neonatal Diabetes Mellitus)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.