Human Gene EIF3A (ENST00000369144.8_7) from GENCODE V47lift37
  Description: eukaryotic translation initiation factor 3 subunit A (from RefSeq NM_003750.4)
Gencode Transcript: ENST00000369144.8_7
Gencode Gene: ENSG00000107581.14_10
Transcript (Including UTRs)
   Position: hg19 chr10:120,793,182-120,840,329 Size: 47,148 Total Exon Count: 22 Strand: -
Coding Region
   Position: hg19 chr10:120,795,551-120,840,188 Size: 44,638 Coding Exon Count: 22 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:120,793,182-120,840,329)mRNA (may differ from genome)Protein (1382 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EIF3A_HUMAN
DESCRIPTION: RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10; AltName: Full=eIF-3-theta; AltName: Full=eIF3 p167; AltName: Full=eIF3 p180; AltName: Full=eIF3 p185;
FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.
SUBUNIT: Interacts with EIF4G1 (By similarity). Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is composed of 13 subunits: EIF3A, EIF3B, EIF3C, EIF3D, EIF3E, EIF3F, EIF3G, EIF3H, EIF3I, EIF3J, EIF3K, EIF3L and EIF3M. The eIF-3 complex appears to include 3 stable modules: module A is composed of EIF3A, EIF3B, EIF3G and EIF3I; module B is composed of EIF3F, EIF3H, and EIF3M; and module C is composed of EIF3C, EIF3D, EIF3E, EIF3L and EIF3K. EIF3C of module C binds EIF3B of module A and EIF3H of module B, thereby linking the three modules. EIF3J is a labile subunit that binds to the eIF-3 complex via EIF3B. The eIF-3 complex interacts with RPS6KB1 under conditions of nutrient depletion. Mitogenic stimulation leads to binding and activation of a complex composed of MTOR and RPTOR, leading to phosphorylation and release of RPS6KB1 and binding of EIF4B to eIF-3. Also interacts with KRT7 and PIWIL2.
INTERACTION: P55884:EIF3B; NbExp=5; IntAct=EBI-366617, EBI-366696; P08729:KRT7; NbExp=3; IntAct=EBI-366617, EBI-297833; Q9Q2G4:ORF (xeno); NbExp=5; IntAct=EBI-366617, EBI-6248094; Q92900-2:UPF1; NbExp=5; IntAct=EBI-366617, EBI-373492;
SUBCELLULAR LOCATION: Cytoplasm.
PTM: Phosphorylated. Phosphorylation is enhanced upon serum stimulation.
MASS SPECTROMETRY: Mass=166758.3; Method=Unknown; Range=1-1382; Source=PubMed:17322308;
SIMILARITY: Belongs to the eIF-3 subunit A family.
SIMILARITY: Contains 1 PCI domain.
SEQUENCE CAUTION: Sequence=BAA09488.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EIF3A
Diseases sorted by gene-association score: bardet-biedl syndrome (1), cribriform carcinoma (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 81.24 RPKM in Cells - Cultured fibroblasts
Total median expression: 1839.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -62.40141-0.443 Picture PostScript Text
3' UTR -589.302369-0.249 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000717 - PCI_dom
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF01399 - PCI domain

SCOP Domains:
46785 - "Winged helix" DNA-binding domain

ModBase Predicted Comparative 3D Structure on Q14152
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003743 translation initiation factor activity
GO:0005198 structural molecule activity
GO:0005515 protein binding
GO:0030971 receptor tyrosine kinase binding

Biological Process:
GO:0001732 formation of cytoplasmic translation initiation complex
GO:0002188 translation reinitiation
GO:0006412 translation
GO:0006413 translational initiation
GO:0070373 negative regulation of ERK1 and ERK2 cascade
GO:0075522 IRES-dependent viral translational initiation
GO:0075525 viral translational termination-reinitiation

Cellular Component:
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005852 eukaryotic translation initiation factor 3 complex
GO:0005874 microtubule
GO:0016020 membrane
GO:0043614 multi-eIF complex
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e
GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m


-  Descriptions from all associated GenBank mRNAs
  LP895213 - Sequence 77 from Patent EP3253886.
D50929 - Homo sapiens mRNA for KIAA0139 gene.
AJ227915 - Homo sapiens partial mRNA; ID LG43-4A2, LG141-7B1.
U58046 - Human p167 mRNA, complete cds.
U78311 - Human translation initiation factor 3 large subunit mRNA, complete cds.
BC020285 - Homo sapiens eukaryotic translation initiation factor 3, subunit A, mRNA (cDNA clone IMAGE:4519449).
JD530794 - Sequence 511818 from Patent EP1572962.
BC114429 - Homo sapiens eukaryotic translation initiation factor 3, subunit A, mRNA (cDNA clone MGC:133101 IMAGE:40027607), complete cds.
JD309769 - Sequence 290793 from Patent EP1572962.
JD557634 - Sequence 538658 from Patent EP1572962.
JX312508 - Homo sapiens eukaryotic translation initiation factor 3 (eIF3a) mRNA, complete cds.
AK302575 - Homo sapiens cDNA FLJ50921 complete cds, highly similar to Eukaryotic translation initiation factor 3 subunit 10.
JD082889 - Sequence 63913 from Patent EP1572962.
JD320159 - Sequence 301183 from Patent EP1572962.
JD509466 - Sequence 490490 from Patent EP1572962.
AB383762 - Synthetic construct DNA, clone: pF1KSDA0139, Homo sapiens EIF3A gene for eukaryotic translation initiation factor 3 subunit 10, complete cds, without stop codon, in Flexi system.
AK309542 - Homo sapiens cDNA, FLJ99583.
AK307610 - Homo sapiens cDNA, FLJ97558.
BC014625 - Homo sapiens eukaryotic translation initiation factor 3, subunit A, mRNA (cDNA clone IMAGE:2960670), **** WARNING: chimeric clone ****.
BC054342 - Homo sapiens eukaryotic translation initiation factor 3, subunit A, mRNA (cDNA clone IMAGE:6503129), partial cds.
BC064926 - Homo sapiens eukaryotic translation initiation factor 3, subunit A, mRNA (cDNA clone IMAGE:6141659), partial cds.
BC107776 - Homo sapiens eukaryotic translation initiation factor 3, subunit A, mRNA (cDNA clone IMAGE:6497771), partial cds.
BC033769 - Homo sapiens eukaryotic translation initiation factor 3, subunit A, mRNA (cDNA clone IMAGE:4341088), partial cds.
AK097145 - Homo sapiens cDNA FLJ39826 fis, clone SPLEN2012606.
LF211386 - JP 2014500723-A/18889: Polycomb-Associated Non-Coding RNAs.
LF346032 - JP 2014500723-A/153535: Polycomb-Associated Non-Coding RNAs.
JD289212 - Sequence 270236 from Patent EP1572962.
MA581609 - JP 2018138019-A/153535: Polycomb-Associated Non-Coding RNAs.
MA446963 - JP 2018138019-A/18889: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_iresPathway - Internal Ribosome entry pathway
h_eifPathway - Eukaryotic protein translation
h_mTORPathway - mTOR Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein Q14152 (Reactome details) participates in the following event(s):

R-HSA-72676 eIF3 and eIF1A bind to the 40S subunit
R-HSA-72619 eIF2:GTP is hydrolyzed, eIFs are released
R-HSA-72691 Formation of the 43S pre-initiation complex
R-HSA-156808 Formation of translation initiation complexes yielding circularized Ceruloplasmin mRNA in a 'closed-loop' conformation
R-HSA-157849 Formation of translation initiation complexes containing mRNA that does not circularize
R-HSA-72621 Ribosomal scanning
R-HSA-72697 Start codon recognition
R-HSA-156823 Association of phospho-L13a with GAIT element of Ceruloplasmin mRNA
R-HSA-72689 Formation of a pool of free 40S subunits
R-HSA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-HSA-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-HSA-72649 Translation initiation complex formation
R-HSA-72737 Cap-dependent Translation Initiation
R-HSA-72702 Ribosomal scanning and start codon recognition
R-HSA-156827 L13a-mediated translation
R-HSA-72662 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
R-HSA-72613 Eukaryotic Translation Initiation
R-HSA-72766 Translation
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B1AMV5, B4DYS1, EIF3A , EIF3A_HUMAN, EIF3S10 , ENST00000369144.1, ENST00000369144.2, ENST00000369144.3, ENST00000369144.4, ENST00000369144.5, ENST00000369144.6, ENST00000369144.7, F5H335, KIAA0139, NM_003750, O00653, Q14152, Q15778, uc318hjh.1, uc318hjh.2
UCSC ID: ENST00000369144.8_7
RefSeq Accession: NM_003750.4
Protein: Q14152 (aka EIF3A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.