Human Gene EIF4E3 (ENST00000425534.8_7) from GENCODE V47lift37
  Description: eukaryotic translation initiation factor 4E family member 3, transcript variant 1 (from RefSeq NM_001134651.2)
Gencode Transcript: ENST00000425534.8_7
Gencode Gene: ENSG00000163412.13_10
Transcript (Including UTRs)
   Position: hg19 chr3:71,724,565-71,774,553 Size: 49,989 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr3:71,733,833-71,774,518 Size: 40,686 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:71,724,565-71,774,553)mRNA (may differ from genome)Protein (224 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IF4E3_HUMAN
DESCRIPTION: RecName: Full=Eukaryotic translation initiation factor 4E type 3; Short=eIF-4E type 3; Short=eIF-4E3; Short=eIF4E type 3; Short=eIF4E-3;
FUNCTION: Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis. May act as an inhibitor of EIF4E1 activity (By similarity).
SUBUNIT: eIF4F is a multi-subunit complex, the composition of which varies with external and internal environmental conditions. It is composed of at least eIF4A, eIF4E and eIF4G (By similarity). EIF4E3 interacts with EIF4G1, but not with EIF4EBP1, EIF4EBP2 and EIF4EBP3 (By similarity).
SIMILARITY: Belongs to the eukaryotic initiation factor 4E family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.38 RPKM in Whole Blood
Total median expression: 229.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -16.9035-0.483 Picture PostScript Text
3' UTR -2270.109268-0.245 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR023398 - TIF_eIF4e-like_dom
IPR001040 - TIF_eIF_4E

Pfam Domains:
PF01652 - Eukaryotic initiation factor 4E

SCOP Domains:
55418 - eIF4e-like

ModBase Predicted Comparative 3D Structure on Q8N5X7
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0003743 translation initiation factor activity

Biological Process:
GO:0006412 translation
GO:0006413 translational initiation
GO:0006417 regulation of translation

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005845 mRNA cap binding complex


-  Descriptions from all associated GenBank mRNAs
  AL161983 - Homo sapiens mRNA; cDNA DKFZp761K2024 (from clone DKFZp761K2024).
AK126999 - Homo sapiens cDNA FLJ45054 fis, clone BRAWH3022719, highly similar to Homo sapiens eukaryotic translation initiation factor 4E member 3 (EIF4E3), mRNA.
BC022303 - Homo sapiens eukaryotic translation initiation factor 4E member 3, mRNA (cDNA clone IMAGE:4721680).
BX648727 - Homo sapiens mRNA; cDNA DKFZp686J24234 (from clone DKFZp686J24234).
BC068443 - Homo sapiens eukaryotic translation initiation factor 4E family member 3, mRNA (cDNA clone MGC:86971 IMAGE:4820931), complete cds.
BC031289 - Homo sapiens eukaryotic translation initiation factor 4E family member 3, mRNA (cDNA clone MGC:39820 IMAGE:5299499), complete cds.
JD113227 - Sequence 94251 from Patent EP1572962.
JD369377 - Sequence 350401 from Patent EP1572962.
JD375710 - Sequence 356734 from Patent EP1572962.
JD216004 - Sequence 197028 from Patent EP1572962.
JD249170 - Sequence 230194 from Patent EP1572962.
JD168408 - Sequence 149432 from Patent EP1572962.
JD071172 - Sequence 52196 from Patent EP1572962.
JD084774 - Sequence 65798 from Patent EP1572962.
JD111131 - Sequence 92155 from Patent EP1572962.
JD249020 - Sequence 230044 from Patent EP1572962.
JD148058 - Sequence 129082 from Patent EP1572962.
JD298769 - Sequence 279793 from Patent EP1572962.
JD349617 - Sequence 330641 from Patent EP1572962.
JD263853 - Sequence 244877 from Patent EP1572962.
JD171379 - Sequence 152403 from Patent EP1572962.
JD042927 - Sequence 23951 from Patent EP1572962.
AK313656 - Homo sapiens cDNA, FLJ94236.
KJ896026 - Synthetic construct Homo sapiens clone ccsbBroadEn_05420 EIF4E3 gene, encodes complete protein.
JD129491 - Sequence 110515 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8N5X7 (Reactome details) participates in the following event(s):

R-HSA-1678842 Competitive inhibition of translation initiation by ISGylated 4EHP
R-HSA-1169408 ISG15 antiviral mechanism
R-HSA-1169410 Antiviral mechanism by IFN-stimulated genes
R-HSA-913531 Interferon Signaling
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B2R963, ENST00000425534.1, ENST00000425534.2, ENST00000425534.3, ENST00000425534.4, ENST00000425534.5, ENST00000425534.6, ENST00000425534.7, IF4E3_HUMAN, NM_001134651, Q6NUT1, Q8N5X7, uc319utc.1, uc319utc.2
UCSC ID: ENST00000425534.8_7
RefSeq Accession: NM_001134651.2
Protein: Q8N5X7 (aka IF4E3_HUMAN or IFE3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.