Human Gene EIF4H (ENST00000265753.13_9) from GENCODE V47lift37
  Description: eukaryotic translation initiation factor 4H, transcript variant 1 (from RefSeq NM_022170.2)
Gencode Transcript: ENST00000265753.13_9
Gencode Gene: ENSG00000106682.16_12
Transcript (Including UTRs)
   Position: hg19 chr7:73,588,686-73,611,426 Size: 22,741 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr7:73,588,714-73,609,638 Size: 20,925 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:73,588,686-73,611,426)mRNA (may differ from genome)Protein (248 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IF4H_HUMAN
DESCRIPTION: RecName: Full=Eukaryotic translation initiation factor 4H; Short=eIF-4H; AltName: Full=Williams-Beuren syndrome chromosomal region 1 protein;
FUNCTION: Stimulates the RNA helicase activity of EIF4A in the translation initiation complex. Binds weakly mRNA.
SUBUNIT: Interacts with HHV-1 Vhs.
INTERACTION: P60842:EIF4A1; NbExp=2; IntAct=EBI-748492, EBI-73449;
SUBCELLULAR LOCATION: Cytoplasm, perinuclear region (By similarity).
TISSUE SPECIFICITY: The short isoform is the predominant isoform and is expressed alone in liver and skeletal muscle. Both isoforms are expressed in fibroblast, spleen, testis and bone marrow. Levels are high in lung and pancreas and low in heart, frontal cortex and kidney.
DISEASE: Note=EIF4H is located in the Williams-Beuren syndrome (WBS) critical region. WBS results from a hemizygous deletion of several genes on chromosome 7q11.23, thought to arise as a consequence of unequal crossing over between highly homologous low-copy repeat sequences flanking the deleted region. Haploinsufficiency of EIF4H may be the cause of certain cardiovascular and musculo-skeletal abnormalities observed in the disease.
SIMILARITY: Contains 1 RRM (RNA recognition motif) domain.
SEQUENCE CAUTION: Sequence=BAA05063.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EIF4H
Diseases sorted by gene-association score: williams-beuren syndrome (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 185.40 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 5830.32 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -6.5028-0.232 Picture PostScript Text
3' UTR -641.901788-0.359 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR012677 - Nucleotide-bd_a/b_plait
IPR000504 - RRM_dom

Pfam Domains:
PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

SCOP Domains:
54928 - RNA-binding domain, RBD

ModBase Predicted Comparative 3D Structure on Q15056
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003743 translation initiation factor activity
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0008135 translation factor activity, RNA binding
GO:0033592 RNA strand annealing activity
GO:0034057 RNA strand-exchange activity
GO:0043024 ribosomal small subunit binding
GO:0045296 cadherin binding

Biological Process:
GO:0001731 formation of translation preinitiation complex
GO:0006412 translation
GO:0006413 translational initiation
GO:0006446 regulation of translational initiation
GO:0016032 viral process
GO:0019953 sexual reproduction
GO:0048589 developmental growth
GO:0097010 eukaryotic translation initiation factor 4F complex assembly

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005844 polysome
GO:0016020 membrane
GO:0016281 eukaryotic translation initiation factor 4F complex
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK314749 - Homo sapiens cDNA, FLJ95613.
AK297651 - Homo sapiens cDNA FLJ60708 complete cds, highly similar to Eukaryotic translation initiation factor 4H.
AK290676 - Homo sapiens cDNA FLJ75661 complete cds, highly similar to Homo sapiens Williams-Beuren syndrome chromosome region 1 (WBSCR1), transcript variant 2, mRNA.
BC066928 - Homo sapiens eukaryotic translation initiation factor 4H, mRNA (cDNA clone MGC:87218 IMAGE:5263716), complete cds.
D26068 - Homo sapiens KIAA0038 mRNA.
BC021214 - Homo sapiens eukaryotic translation initiation factor 4H, mRNA (cDNA clone MGC:12890 IMAGE:4139578), complete cds.
BC010021 - Homo sapiens eukaryotic translation initiation factor 4H, mRNA (cDNA clone MGC:19645 IMAGE:2960402), complete cds.
AB385268 - Synthetic construct DNA, clone: pF1KA0038, Homo sapiens EIF4H gene for eukaryotic translation initiation factor 4H, complete cds, without stop codon, in Flexi system.
DQ891924 - Synthetic construct Homo sapiens clone IMAGE:100004554; FLH263564.01X; RZPDo839D08136D Williams-Beuren syndrome chromosome region 1 (WBSCR1) gene, encodes complete protein.
DQ895111 - Synthetic construct Homo sapiens clone IMAGE:100009571; FLH181471.01L; RZPDo839D10135D Williams-Beuren syndrome chromosome region 1 (WBSCR1) gene, encodes complete protein.
DQ895112 - Synthetic construct Homo sapiens clone IMAGE:100009572; FLH263610.01L; RZPDo839D11135D Williams-Beuren syndrome chromosome region 1 (WBSCR1) gene, encodes complete protein.
KJ892381 - Synthetic construct Homo sapiens clone ccsbBroadEn_01775 EIF4H gene, encodes complete protein.
DQ579570 - Homo sapiens piRNA piR-47682, complete sequence.
JD372692 - Sequence 353716 from Patent EP1572962.
JD459252 - Sequence 440276 from Patent EP1572962.
JD113634 - Sequence 94658 from Patent EP1572962.
JD254186 - Sequence 235210 from Patent EP1572962.
JD176947 - Sequence 157971 from Patent EP1572962.
JD538419 - Sequence 519443 from Patent EP1572962.
BC023534 - Homo sapiens cDNA clone IMAGE:4122532, **** WARNING: chimeric clone ****.
JD551587 - Sequence 532611 from Patent EP1572962.
JD149660 - Sequence 130684 from Patent EP1572962.
JD113436 - Sequence 94460 from Patent EP1572962.
JD036421 - Sequence 17445 from Patent EP1572962.
JD514639 - Sequence 495663 from Patent EP1572962.
JD241662 - Sequence 222686 from Patent EP1572962.
JD343342 - Sequence 324366 from Patent EP1572962.
JD022213 - Sequence 3237 from Patent EP1572962.
JD032466 - Sequence 13490 from Patent EP1572962.
DQ571043 - Homo sapiens piRNA piR-31155, complete sequence.
JD445226 - Sequence 426250 from Patent EP1572962.
JD480146 - Sequence 461170 from Patent EP1572962.
JD543849 - Sequence 524873 from Patent EP1572962.
JD221201 - Sequence 202225 from Patent EP1572962.
JD188842 - Sequence 169866 from Patent EP1572962.
JD202295 - Sequence 183319 from Patent EP1572962.
JD546502 - Sequence 527526 from Patent EP1572962.
JD282669 - Sequence 263693 from Patent EP1572962.
JD063231 - Sequence 44255 from Patent EP1572962.
JD162892 - Sequence 143916 from Patent EP1572962.
JD162893 - Sequence 143917 from Patent EP1572962.
JD453769 - Sequence 434793 from Patent EP1572962.
JD252826 - Sequence 233850 from Patent EP1572962.
JD538738 - Sequence 519762 from Patent EP1572962.
JD243872 - Sequence 224896 from Patent EP1572962.
JD452755 - Sequence 433779 from Patent EP1572962.
JD373065 - Sequence 354089 from Patent EP1572962.
JD391946 - Sequence 372970 from Patent EP1572962.
JD384594 - Sequence 365618 from Patent EP1572962.
JD249191 - Sequence 230215 from Patent EP1572962.
JD376358 - Sequence 357382 from Patent EP1572962.
JD369889 - Sequence 350913 from Patent EP1572962.
JD279991 - Sequence 261015 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15056 (Reactome details) participates in the following event(s):

R-HSA-72619 eIF2:GTP is hydrolyzed, eIFs are released
R-HSA-72621 Ribosomal scanning
R-HSA-157849 Formation of translation initiation complexes containing mRNA that does not circularize
R-HSA-72697 Start codon recognition
R-HSA-156823 Association of phospho-L13a with GAIT element of Ceruloplasmin mRNA
R-HSA-156808 Formation of translation initiation complexes yielding circularized Ceruloplasmin mRNA in a 'closed-loop' conformation
R-HSA-72662 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
R-HSA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-HSA-72702 Ribosomal scanning and start codon recognition
R-HSA-72649 Translation initiation complex formation
R-HSA-156827 L13a-mediated translation
R-HSA-72737 Cap-dependent Translation Initiation
R-HSA-72613 Eukaryotic Translation Initiation
R-HSA-72766 Translation
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: A8K3R1, D3DXF6, D3DXF8, ENST00000265753.1, ENST00000265753.10, ENST00000265753.11, ENST00000265753.12, ENST00000265753.2, ENST00000265753.3, ENST00000265753.4, ENST00000265753.5, ENST00000265753.6, ENST00000265753.7, ENST00000265753.8, ENST00000265753.9, IF4H_HUMAN, KIAA0038, NM_022170, Q15056, uc317idz.1, uc317idz.2, WBSCR1, WSCR1
UCSC ID: ENST00000265753.13_9
RefSeq Accession: NM_022170.2
Protein: Q15056 (aka IF4H_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.