Human Gene ERP29 (ENST00000261735.4_4) from GENCODE V47lift37
  Description: endoplasmic reticulum protein 29, transcript variant 1 (from RefSeq NM_006817.4)
Gencode Transcript: ENST00000261735.4_4
Gencode Gene: ENSG00000089248.7_8
Transcript (Including UTRs)
   Position: hg19 chr12:112,451,230-112,461,253 Size: 10,024 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr12:112,451,270-112,460,456 Size: 9,187 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:112,451,230-112,461,253)mRNA (may differ from genome)Protein (261 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ERP29
Diseases sorted by gene-association score: intrahepatic cholestasis (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 73.99 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 1935.80 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.2040-0.180 Picture PostScript Text
3' UTR -213.10797-0.267 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
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-  Descriptions from all associated GenBank mRNAs
  BC101495 - Homo sapiens endoplasmic reticulum protein 29, mRNA (cDNA clone MGC:126544 IMAGE:8069001), complete cds.
BC101493 - Homo sapiens endoplasmic reticulum protein 29, transcript variant 1, mRNA (cDNA clone MGC:126542 IMAGE:8068999), complete cds.
FJ224317 - Homo sapiens epididymis secretory protein Li 107 (HEL-S-107) mRNA, complete cds.
X94910 - Homo sapiens mRNA for ERp28 protein.
KJ893181 - Synthetic construct Homo sapiens clone ccsbBroadEn_02575 ERP29 gene, encodes complete protein.
CR541667 - Homo sapiens full open reading frame cDNA clone RZPDo834E0727D for gene C12orf8, chromosome 12 open reading frame 8; complete cds, incl. stopcodon.
AK309426 - Homo sapiens cDNA, FLJ99467.
JD544410 - Sequence 525434 from Patent EP1572962.
JD503725 - Sequence 484749 from Patent EP1572962.
JD320737 - Sequence 301761 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000261735.1, ENST00000261735.2, ENST00000261735.3, ERP29 , hCG_40139 , HEL-S-107 , NM_006817, uc317gtc.1, uc317gtc.2, V9HW71, V9HW71_HUMAN
UCSC ID: ENST00000261735.4_4
RefSeq Accession: NM_006817.4

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.