Human Gene ESCO2 (ENST00000305188.13_7) from GENCODE V47lift37
  Description: establishment of sister chromatid cohesion N-acetyltransferase 2 (from RefSeq NM_001017420.3)
Gencode Transcript: ENST00000305188.13_7
Gencode Gene: ENSG00000171320.15_8
Transcript (Including UTRs)
   Position: hg19 chr8:27,632,071-27,662,833 Size: 30,763 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr8:27,633,032-27,660,955 Size: 27,924 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:27,632,071-27,662,833)mRNA (may differ from genome)Protein (601 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ESCO2_HUMAN
DESCRIPTION: RecName: Full=N-acetyltransferase ESCO2; EC=2.3.1.-; AltName: Full=Establishment of cohesion 1 homolog 2; Short=ECO1 homolog 2;
FUNCTION: Acetyltransferase required for the establishment of sister chromatid cohesion. Couples the processes of cohesion and DNA replication to ensure that only sister chromatids become paired together. In contrast to the structural cohesins, the deposition and establishment factors are required only during the S phase. Acetylates the cohesin component SMC3.
SUBCELLULAR LOCATION: Nucleus. Chromosome.
TISSUE SPECIFICITY: Widely expressed in fetal tissues. In adult, it is expressed in thymus, placenta and small intestine.
DISEASE: Defects in ESCO2 are the cause of Roberts syndrome (RBS) [MIM:268300]. RBS is a rare autosomal recessive disorder characterized by pre- and postnatal growth retardation, microcephaly, bilateral cleft lip and palate, and mesomelic symmetric limb reduction. Severely affected infants may be stillborn or die shortly after birth. RBS chromosomes have a lack of cohesion involving the heterochromatic C-banding regions around centromeres and the distal portion of the long arm of the Y chromosome (known as premature centromere separation, heterochromatin repulsion or puffing, or RS effect).
DISEASE: Defects in ESCO2 are the cause of SC phocomelia syndrome (SCPS) [MIM:269000]; also known as SC pseudothalidomide syndrome. SCPS has a milder phenotype than RBS, with a lesser degree of symmetric limb reduction and additionally includes flexion contractures of various joints, midfacial hemangioma, hypoplastic cartilage of ears and nose, scant silvery-blond hair, and cloudy corneae. Although microcephaly is present, mental retardation may be mild and survival into adulthood is common.
SIMILARITY: Belongs to the acetyltransferase family. GCN5 subfamily.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ESCO2";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ESCO2
Diseases sorted by gene-association score: roberts syndrome* (1720), sc phocomelia syndrome* (1036), phocomelia (20), intraocular retinoblastoma (16), leukocoria (11), cornelia de lange syndrome (7), lymphogranuloma venereum (7), retinal perforation (6), long qt syndrome 1 (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.53 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 13.28 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -23.7070-0.339 Picture PostScript Text
3' UTR -521.101878-0.277 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026656 - AcTrfase_ESCO

Pfam Domains:
PF13878 - zinc-finger of acetyl-transferase ESCO
PF13880 - ESCO1/2 acetyl-transferase

SCOP Domains:
55729 - Acyl-CoA N-acyltransferases (Nat)

ModBase Predicted Comparative 3D Structure on Q56NI9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004468 lysine N-acetyltransferase activity, acting on acetyl phosphate as donor
GO:0008080 N-acetyltransferase activity
GO:0016407 acetyltransferase activity
GO:0016740 transferase activity
GO:0016746 transferase activity, transferring acyl groups
GO:0046872 metal ion binding

Biological Process:
GO:0002244 hematopoietic progenitor cell differentiation
GO:0006275 regulation of DNA replication
GO:0006302 double-strand break repair
GO:0007049 cell cycle
GO:0007059 chromosome segregation
GO:0034421 post-translational protein acetylation
GO:0071168 protein localization to chromatin

Cellular Component:
GO:0000785 chromatin
GO:0001741 XY body
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005794 Golgi apparatus
GO:0010369 chromocenter
GO:0030054 cell junction
GO:0031618 nuclear pericentric heterochromatin
GO:0035861 site of double-strand break


-  Descriptions from all associated GenBank mRNAs
  AY882862 - Homo sapiens establishment of cohesion 1 homolog 2 (ESCO2) mRNA, complete cds.
AK124215 - Homo sapiens cDNA FLJ42221 fis, clone THYMU2039350, highly similar to N-acetyltransferase ESCO2 (EC 2.3.1.-).
AF306679 - Homo sapiens clone K(1)157-2A mRNA sequence.
AL832666 - Homo sapiens mRNA; cDNA DKFZp313K1012 (from clone DKFZp313K1012).
BC034641 - Homo sapiens establishment of cohesion 1 homolog 2 (S. cerevisiae), mRNA (cDNA clone IMAGE:4838966), complete cds.
AB527138 - Synthetic construct DNA, clone: pF1KE0357, Homo sapiens ESCO2 gene for establishment of cohesion 1 homolog 2, without stop codon, in Flexi system.
BC141418 - Synthetic construct Homo sapiens clone IMAGE:100014712, MGC:175346 establishment of cohesion 1 homolog 2 (S. cerevisiae) (ESCO2) mRNA, encodes complete protein.
BC146562 - Synthetic construct Homo sapiens clone IMAGE:100014821, MGC:180137 establishment of cohesion 1 homolog 2 (S. cerevisiae) (ESCO2) mRNA, encodes complete protein.
BC040615 - Homo sapiens establishment of cohesion 1 homolog 2 (S. cerevisiae), mRNA (cDNA clone IMAGE:5576264), with apparent retained intron.
AF306677 - Homo sapiens clone K2r-1f(50) mRNA sequence.
AF306678 - Homo sapiens clone K2r-1f(59) mRNA sequence.
AF306675 - Homo sapiens clone 305-4G mRNA sequence.
JD173480 - Sequence 154504 from Patent EP1572962.
BC017933 - Homo sapiens establishment of cohesion 1 homolog 2 (S. cerevisiae), mRNA (cDNA clone IMAGE:4697769).
JD339615 - Sequence 320639 from Patent EP1572962.
AF306676 - Homo sapiens clone K1-1a mRNA sequence.
JD097203 - Sequence 78227 from Patent EP1572962.
JD501082 - Sequence 482106 from Patent EP1572962.
JD207787 - Sequence 188811 from Patent EP1572962.
JD179250 - Sequence 160274 from Patent EP1572962.
JD293485 - Sequence 274509 from Patent EP1572962.
JD139373 - Sequence 120397 from Patent EP1572962.
JD037179 - Sequence 18203 from Patent EP1572962.
JD307495 - Sequence 288519 from Patent EP1572962.
JD425257 - Sequence 406281 from Patent EP1572962.
JD239022 - Sequence 220046 from Patent EP1572962.
JD375127 - Sequence 356151 from Patent EP1572962.
JD314993 - Sequence 296017 from Patent EP1572962.
JD053048 - Sequence 34072 from Patent EP1572962.
JD088932 - Sequence 69956 from Patent EP1572962.
JD522435 - Sequence 503459 from Patent EP1572962.
JD376322 - Sequence 357346 from Patent EP1572962.
JD159614 - Sequence 140638 from Patent EP1572962.
JD560870 - Sequence 541894 from Patent EP1572962.
JD542358 - Sequence 523382 from Patent EP1572962.
JD138436 - Sequence 119460 from Patent EP1572962.
JD138437 - Sequence 119461 from Patent EP1572962.
JD066683 - Sequence 47707 from Patent EP1572962.
JD183977 - Sequence 165001 from Patent EP1572962.
JD092340 - Sequence 73364 from Patent EP1572962.
JD558977 - Sequence 540001 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q56NI9 (Reactome details) participates in the following event(s):

R-HSA-2468039 Acetylation of SMC3 subunit of chromosomal arm associated cohesin by ESCO1 or ESCO2
R-HSA-2473152 Acetylation of SMC3 subunit of centromeric chromatin associated cohesin by ESCO1 or ESCO2
R-HSA-2468052 Establishment of Sister Chromatid Cohesion
R-HSA-69242 S Phase
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: B3KW59, ENST00000305188.1, ENST00000305188.10, ENST00000305188.11, ENST00000305188.12, ENST00000305188.2, ENST00000305188.3, ENST00000305188.4, ENST00000305188.5, ENST00000305188.6, ENST00000305188.7, ENST00000305188.8, ENST00000305188.9, ESCO2 , ESCO2_HUMAN, NM_001017420, Q49AP4, Q56NI9, uc317noz.1, uc317noz.2
UCSC ID: ENST00000305188.13_7
RefSeq Accession: NM_001017420.3
Protein: Q56NI9 (aka ESCO2_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ESCO2:
rbs (ESCO2 Spectrum Disorder)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.