Human Gene EXT1 (ENST00000378204.7_7) from GENCODE V47lift37
  Description: exostosin glycosyltransferase 1 (from RefSeq NM_000127.3)
Gencode Transcript: ENST00000378204.7_7
Gencode Gene: ENSG00000182197.13_12
Transcript (Including UTRs)
   Position: hg19 chr8:118,806,729-119,124,065 Size: 317,337 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr8:118,811,951-119,123,285 Size: 311,335 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:118,806,729-119,124,065)mRNA (may differ from genome)Protein (746 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EXT1_HUMAN
DESCRIPTION: RecName: Full=Exostosin-1; EC=2.4.1.224; EC=2.4.1.225; AltName: Full=Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase; AltName: Full=Multiple exostoses protein 1; AltName: Full=Putative tumor suppressor protein EXT1;
FUNCTION: Glycosyltransferase required for the biosynthesis of heparan-sulfate. The EXT1/EXT2 complex possesses substantially higher glycosyltransferase activity than EXT1 or EXT2 alone. Appears to be a tumor suppressor.
CATALYTIC ACTIVITY: UDP-N-acetyl-D-glucosamine + beta-D- glucuronosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-proteoglycan = UDP + N-acetyl-alpha-D-glucosaminyl-(1->4)-beta-D-glucuronosyl- (1->4)-N-acetyl-alpha-D-glucosaminyl-proteoglycan.
CATALYTIC ACTIVITY: UDP-alpha-D-glucuronate + N-acetyl-alpha-D- glucosaminyl-(1->4)-beta-D-glucuronosyl-proteoglycan = UDP + beta- D-glucuronosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-(1->4)-beta-D- glucuronosyl-proteoglycan.
PATHWAY: Protein modification; protein glycosylation.
SUBUNIT: Forms a homo/hetero-oligomeric complex with EXT2.
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass type II membrane protein. Golgi apparatus membrane; Single-pass type II membrane protein. Note=The EXT1/EXT2 complex is localized in the Golgi apparatus.
TISSUE SPECIFICITY: Ubiquitous.
DISEASE: Defects in EXT1 are a cause of hereditary multiple exostoses type 1 (EXT1) [MIM:133700]. EXT is a genetically heterogeneous bone disorder caused by genes segregating on human chromosomes 8, 11, and 19 and designated EXT1, EXT2 and EXT3 respectively. EXT is a dominantly inherited skeletal disorder primarily affecting endochondral bone during growth. The disease is characterized by formation of numerous cartilage-capped, benign bone tumors (osteocartilaginous exostoses or osteochondromas) that are often accompanied by skeletal deformities and short stature. In a small percentage of cases exostoses have exhibited malignant transformation resulting in an osteosarcoma or chondrosarcoma. Osteochondromas development can also occur as a sporadic event.
DISEASE: Defects in EXT1 are a cause of tricho-rhino-phalangeal syndrome type 2 (TRPS2) [MIM:150230]. A syndrome that combines the clinical features of trichorhinophalangeal syndrome type 1 and multiple exostoses type 1. Affected individuals manifest multiple dysmorphic facial features including large, laterally protruding ears, a bulbous nose, an elongated upper lip, as well as sparse scalp hair, winged scapulae, multiple cartilaginous exostoses, redundant skin, and mental retardation. Note=A chromosomal aberration resulting in the loss of functional copies of TRPS1 and EXT1 has been found in TRPS2 patients.
DISEASE: Defects in EXT1 are a cause of chondrosarcoma (CHDSA) [MIM:215300]. It is a malignant neoplasm derived from cartilage cells. Chondrosarcomas range from slow-growing non-metastasizing lesions to highly aggressive metastasizing sarcomas.
SIMILARITY: Belongs to the glycosyltransferase 47 family.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/EXT1ID212.html";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/EXT1";
WEB RESOURCE: Name=GGDB; Note=GlycoGene database; URL="http://riodb.ibase.aist.go.jp/rcmg/ggdb/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EXT1
Diseases sorted by gene-association score: chondrosarcoma* (1281), exostoses, multiple, type 1* (1200), hereditary multiple osteochondromas* (780), trichorhinophalangeal syndrome, type ii* (554), hereditary multiple exostoses* (452), hereditary multiple osteochondromatosis, type i* (100), exostosis (40), osteochondroma (31), trichorhinophalangeal syndrome (20), dysplasia epiphysealis hemimelica (18), osteopoikilosis (12), trichorhinophalangeal syndrome, type i (9), periosteal chondrosarcoma (9), multiple enchondromatosis, maffucci type (8), enchondromatosis, multiple, ollier type (8), juxtacortical chondroma (8), acute inflammation of lacrimal passage (7), dacryocystitis (7), extratemporal epilepsy (7), chronic dacryocystitis (6), chronic inflammation of lacrimal passage (6), hypertrichosis (5), atrophic rhinitis (5), hyperostosis (5), peroneal nerve paralysis (4), muenke syndrome (4), bone remodeling disease (2), connective tissue cancer (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D000082 Acetaminophen
  • D001564 Benzo(a)pyrene
  • D003993 Dibutyl Phthalate
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • C553817 7-(benzylamino)-1,3,4,8-tetrahydropyrrolo(4,3,2-de)quinolin-8(1H)-one
  • D002945 Cisplatin
  • D019327 Copper Sulfate
  • D003375 Coumestrol
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 23.68 RPKM in Artery - Aorta
Total median expression: 237.59 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -311.90780-0.400 Picture PostScript Text
3' UTR -1345.705222-0.258 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004263 - Exostosin
IPR015338 - HexNAc_Trfase_a

Pfam Domains:
PF03016 - Exostosin family
PF09258 - Glycosyl transferase family 64 domain

SCOP Domains:
53448 - Nucleotide-diphospho-sugar transferases

ModBase Predicted Comparative 3D Structure on Q16394
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008375 acetylglucosaminyltransferase activity
GO:0015020 glucuronosyltransferase activity
GO:0016740 transferase activity
GO:0016757 transferase activity, transferring glycosyl groups
GO:0042328 heparan sulfate N-acetylglucosaminyltransferase activity
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
GO:0046982 protein heterodimerization activity
GO:0050508 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity
GO:0050509 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity

Biological Process:
GO:0001501 skeletal system development
GO:0001503 ossification
GO:0006024 glycosaminoglycan biosynthetic process
GO:0006486 protein glycosylation
GO:0007165 signal transduction
GO:0007369 gastrulation
GO:0007411 axon guidance
GO:0007420 brain development
GO:0007492 endoderm development
GO:0007498 mesoderm development
GO:0015012 heparan sulfate proteoglycan biosynthetic process
GO:0015014 heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0021772 olfactory bulb development
GO:0033692 cellular polysaccharide biosynthetic process
GO:0072498 embryonic skeletal joint development

Cellular Component:
GO:0000139 Golgi membrane
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030176 integral component of endoplasmic reticulum membrane


-  Descriptions from all associated GenBank mRNAs
  LF210269 - JP 2014500723-A/17772: Polycomb-Associated Non-Coding RNAs.
BC001174 - Homo sapiens exostoses (multiple) 1, mRNA (cDNA clone MGC:2129 IMAGE:3502232), complete cds.
LF214023 - JP 2014500723-A/21526: Polycomb-Associated Non-Coding RNAs.
AK130054 - Homo sapiens cDNA FLJ26544 fis, clone LNF00142, highly similar to Exostosin-1.
S79639 - EXT1=putative tumour suppressor/hereditary multiple exostoses candidate gene [human, placenta, mRNA, 3183 nt].
AK313129 - Homo sapiens cDNA, FLJ93616, highly similar to Homo sapiens exostoses (multiple) 1 (EXT1), mRNA.
KJ891129 - Synthetic construct Homo sapiens clone ccsbBroadEn_00523 EXT1 gene, encodes complete protein.
KR709775 - Synthetic construct Homo sapiens clone CCSBHm_00005929 EXT1 (EXT1) mRNA, encodes complete protein.
KR709776 - Synthetic construct Homo sapiens clone CCSBHm_00005940 EXT1 (EXT1) mRNA, encodes complete protein.
KR709777 - Synthetic construct Homo sapiens clone CCSBHm_00005960 EXT1 (EXT1) mRNA, encodes complete protein.
KR709778 - Synthetic construct Homo sapiens clone CCSBHm_00005986 EXT1 (EXT1) mRNA, encodes complete protein.
DQ891868 - Synthetic construct clone IMAGE:100004498; FLH180746.01X; RZPDo839F07134D exostoses (multiple) 1 (EXT1) gene, encodes complete protein.
DQ895056 - Synthetic construct Homo sapiens clone IMAGE:100009516; FLH180742.01L; RZPDo839F07133D exostoses (multiple) 1 (EXT1) gene, encodes complete protein.
AB528313 - Synthetic construct DNA, clone: pF1KB5748, Homo sapiens EXT1 gene for exostoses (multiple) 1, without stop codon, in Flexi system.
MA449600 - JP 2018138019-A/21526: Polycomb-Associated Non-Coding RNAs.
MA445846 - JP 2018138019-A/17772: Polycomb-Associated Non-Coding RNAs.
JD311731 - Sequence 292755 from Patent EP1572962.
AF070571 - Homo sapiens clone 24739 mRNA sequence.
LF336468 - JP 2014500723-A/143971: Polycomb-Associated Non-Coding RNAs.
JD255658 - Sequence 236682 from Patent EP1572962.
JD088062 - Sequence 69086 from Patent EP1572962.
JD310890 - Sequence 291914 from Patent EP1572962.
LF336469 - JP 2014500723-A/143972: Polycomb-Associated Non-Coding RNAs.
LF336470 - JP 2014500723-A/143973: Polycomb-Associated Non-Coding RNAs.
LF336471 - JP 2014500723-A/143974: Polycomb-Associated Non-Coding RNAs.
LF336472 - JP 2014500723-A/143975: Polycomb-Associated Non-Coding RNAs.
MA572045 - JP 2018138019-A/143971: Polycomb-Associated Non-Coding RNAs.
MA572046 - JP 2018138019-A/143972: Polycomb-Associated Non-Coding RNAs.
MA572047 - JP 2018138019-A/143973: Polycomb-Associated Non-Coding RNAs.
MA572048 - JP 2018138019-A/143974: Polycomb-Associated Non-Coding RNAs.
MA572049 - JP 2018138019-A/143975: Polycomb-Associated Non-Coding RNAs.
LF336614 - JP 2014500723-A/144117: Polycomb-Associated Non-Coding RNAs.
CU674596 - Synthetic construct Homo sapiens gateway clone IMAGE:100017795 5' read EXT1 mRNA.
LF336615 - JP 2014500723-A/144118: Polycomb-Associated Non-Coding RNAs.
LF336616 - JP 2014500723-A/144119: Polycomb-Associated Non-Coding RNAs.
LF336617 - JP 2014500723-A/144120: Polycomb-Associated Non-Coding RNAs.
LF336618 - JP 2014500723-A/144121: Polycomb-Associated Non-Coding RNAs.
JD516849 - Sequence 497873 from Patent EP1572962.
JD038995 - Sequence 20019 from Patent EP1572962.
JD462090 - Sequence 443114 from Patent EP1572962.
JD056073 - Sequence 37097 from Patent EP1572962.
JD037948 - Sequence 18972 from Patent EP1572962.
LF336619 - JP 2014500723-A/144122: Polycomb-Associated Non-Coding RNAs.
JD375240 - Sequence 356264 from Patent EP1572962.
JD178879 - Sequence 159903 from Patent EP1572962.
JD088530 - Sequence 69554 from Patent EP1572962.
JD406056 - Sequence 387080 from Patent EP1572962.
JD128994 - Sequence 110018 from Patent EP1572962.
JD117411 - Sequence 98435 from Patent EP1572962.
JD458278 - Sequence 439302 from Patent EP1572962.
JD458426 - Sequence 439450 from Patent EP1572962.
JD458473 - Sequence 439497 from Patent EP1572962.
MA572191 - JP 2018138019-A/144117: Polycomb-Associated Non-Coding RNAs.
MA572192 - JP 2018138019-A/144118: Polycomb-Associated Non-Coding RNAs.
MA572193 - JP 2018138019-A/144119: Polycomb-Associated Non-Coding RNAs.
MA572194 - JP 2018138019-A/144120: Polycomb-Associated Non-Coding RNAs.
MA572195 - JP 2018138019-A/144121: Polycomb-Associated Non-Coding RNAs.
MA572196 - JP 2018138019-A/144122: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-6558 - heparan sulfate biosynthesis (late stages)
PWY-6564 - heparan sulfate biosynthesis

Reactome (by CSHL, EBI, and GO)

Protein Q16394 (Reactome details) participates in the following event(s):

R-HSA-2022851 EXT1:EXT2 transfer GlcNAc to the heparan chain
R-HSA-2022919 EXT1:EXT2 transfers GlcNAc to the terminal GlcA residue
R-HSA-2022856 EXT1:EXT2 transfers GlcNAc to heparan
R-HSA-2076392 EXT1:EXT2 transfers GlcA to heparan
R-HSA-2022928 HS-GAG biosynthesis
R-HSA-1638091 Heparan sulfate/heparin (HS-GAG) metabolism
R-HSA-1630316 Glycosaminoglycan metabolism
R-HSA-71387 Metabolism of carbohydrates
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B2R7V2, ENST00000378204.1, ENST00000378204.2, ENST00000378204.3, ENST00000378204.4, ENST00000378204.5, ENST00000378204.6, EXT1 , EXT1_HUMAN, NM_000127, Q16394, Q9BVI9, uc318odg.1, uc318odg.2
UCSC ID: ENST00000378204.7_7
RefSeq Accession: NM_000127.3
Protein: Q16394 (aka EXT1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene EXT1:
ext (Hereditary Multiple Osteochondromas)
tps (Trichorhinophalangeal Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.