Human Gene EXT2 (ENST00000533608.7_5) from GENCODE V47lift37
  Description: exostosin glycosyltransferase 2, transcript variant 2 (from RefSeq NM_207122.2)
Gencode Transcript: ENST00000533608.7_5
Gencode Gene: ENSG00000151348.16_13
Transcript (Including UTRs)
   Position: hg19 chr11:44,117,228-44,273,512 Size: 156,285 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr11:44,129,263-44,265,837 Size: 136,575 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:44,117,228-44,273,512)mRNA (may differ from genome)Protein (718 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EXT2_HUMAN
DESCRIPTION: RecName: Full=Exostosin-2; EC=2.4.1.224; EC=2.4.1.225; AltName: Full=Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase; AltName: Full=Multiple exostoses protein 2; AltName: Full=Putative tumor suppressor protein EXT2;
FUNCTION: Glycosyltransferase required for the biosynthesis of heparan-sulfate. The EXT1/EXT2 complex possesses substantially higher glycosyltransferase activity than EXT1 or EXT2 alone. Appears to be a tumor suppressor.
CATALYTIC ACTIVITY: UDP-N-acetyl-D-glucosamine + beta-D- glucuronosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-proteoglycan = UDP + N-acetyl-alpha-D-glucosaminyl-(1->4)-beta-D-glucuronosyl- (1->4)-N-acetyl-alpha-D-glucosaminyl-proteoglycan.
CATALYTIC ACTIVITY: UDP-alpha-D-glucuronate + N-acetyl-alpha-D- glucosaminyl-(1->4)-beta-D-glucuronosyl-proteoglycan = UDP + beta- D-glucuronosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-(1->4)-beta-D- glucuronosyl-proteoglycan.
PATHWAY: Protein modification; protein glycosylation.
SUBUNIT: Forms a homo/hetero-oligomeric complex with EXT1. Interacts with GALNT5.
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass type II membrane protein. Golgi apparatus membrane; Single-pass type II membrane protein. Note=The EXT1/EXT2 complex is localized in the Golgi apparatus.
TISSUE SPECIFICITY: Ubiquitous.
DISEASE: Defects in EXT2 are a cause of hereditary multiple exostoses type 2 (EXT2) [MIM:133701]. EXT is a genetically heterogeneous bone disorder caused by genes segregating on human chromosomes 8, 11, and 19 and designated EXT1, EXT2 and EXT3 respectively. EXT is a dominantly inherited skeletal disorder primarily affecting endochondral bone during growth. The disease is characterized by formation of numerous cartilage-capped, benign bone tumors (osteocartilaginous exostoses or osteochondromas) that are often accompanied by skeletal deformities and short stature. In a small percentage of cases exostoses have exhibited malignant transformation resulting in an osteosarcoma or chondrosarcoma. Osteochondromas development can also occur as a sporadic event.
DISEASE: Defects in EXT2 are a cause of Potocki-Shaffer syndrome (POSHS) [MIM:601224]. It is a contiguous gene syndrome due to proximal deletion of chromosome 11p11.2, including EXT2 and ALX4.
SIMILARITY: Belongs to the glycosyltransferase 47 family.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/EXT2ID213.html";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/EXT2";
WEB RESOURCE: Name=GGDB; Note=GlycoGene database; URL="http://riodb.ibase.aist.go.jp/rcmg/ggdb/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EXT2
Diseases sorted by gene-association score: seizures, scoliosis, and macrocephaly syndrome* (1229), exostoses, multiple, type 2* (1200), hereditary multiple osteochondromas* (340), hereditary multiple osteochondromatosis, type ii* (100), hereditary multiple exostoses (36), potocki-shaffer syndrome* (31), exostosis (28), chondrosarcoma (23), osteochondroma (21), dysplasia epiphysealis hemimelica (13), clear cell chondrosarcoma (9), scoliosis (8), vulvar melanoma (8), motion sickness (8), multiple enchondromatosis, maffucci type (7), enchondromatosis, multiple, ollier type (7), bone remodeling disease (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.36 RPKM in Cells - Cultured fibroblasts
Total median expression: 644.86 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -101.20205-0.494 Picture PostScript Text
3' UTR -2612.407675-0.340 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004263 - Exostosin
IPR015338 - HexNAc_Trfase_a

Pfam Domains:
PF03016 - Exostosin family
PF09258 - Glycosyl transferase family 64 domain

SCOP Domains:
53448 - Nucleotide-diphospho-sugar transferases

ModBase Predicted Comparative 3D Structure on Q93063
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008375 acetylglucosaminyltransferase activity
GO:0015020 glucuronosyltransferase activity
GO:0016740 transferase activity
GO:0016757 transferase activity, transferring glycosyl groups
GO:0042328 heparan sulfate N-acetylglucosaminyltransferase activity
GO:0046872 metal ion binding
GO:0046982 protein heterodimerization activity
GO:0050508 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity
GO:0050509 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity
GO:0042803 protein homodimerization activity

Biological Process:
GO:0001503 ossification
GO:0001707 mesoderm formation
GO:0006024 glycosaminoglycan biosynthetic process
GO:0006486 protein glycosylation
GO:0007165 signal transduction
GO:0015012 heparan sulfate proteoglycan biosynthetic process
GO:0015014 heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0030154 cell differentiation
GO:0033692 cellular polysaccharide biosynthetic process

Cellular Component:
GO:0000139 Golgi membrane
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043541 UDP-N-acetylglucosamine transferase complex
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AB384969 - Synthetic construct DNA, clone: pF1KB4618, Homo sapiens EXT2 gene for exostosin-2, complete cds, without stop codon, in Flexi system.
U62740 - Human hereditary multiple exostoses gene 2 (EXT2) mRNA, complete cds.
AK312375 - Homo sapiens cDNA, FLJ92700, Homo sapiens exostoses (multiple) 2 (EXT2), mRNA.
BC010058 - Homo sapiens exostoses (multiple) 2, mRNA (cDNA clone MGC:19811 IMAGE:3947503), complete cds.
AK296713 - Homo sapiens cDNA FLJ51510 complete cds, highly similar to Exostosin-2 (EC 2.4.1.224).
BC068545 - Homo sapiens exostoses (multiple) 2, mRNA (cDNA clone MGC:87428 IMAGE:5263866), complete cds.
U72263 - Human multiple exostoses type II protein EXT2.I mRNA, complete cds.
BC013050 - Homo sapiens cDNA clone IMAGE:3863353, containing frame-shift errors.
BX648142 - Homo sapiens mRNA; cDNA DKFZp686P0476 (from clone DKFZp686P0476).
U64511 - Human hereditary multiple exostoses gene 2 protein (ext2) mRNA, complete cds.
JF432315 - Synthetic construct Homo sapiens clone IMAGE:100073500 exostoses (multiple) 2 (EXT2) gene, encodes complete protein.
KJ891130 - Synthetic construct Homo sapiens clone ccsbBroadEn_00524 EXT2 gene, encodes complete protein.
KR710406 - Synthetic construct Homo sapiens clone CCSBHm_00012169 EXT2 (EXT2) mRNA, encodes complete protein.
KR710407 - Synthetic construct Homo sapiens clone CCSBHm_00012181 EXT2 (EXT2) mRNA, encodes complete protein.
KR710408 - Synthetic construct Homo sapiens clone CCSBHm_00012194 EXT2 (EXT2) mRNA, encodes complete protein.
KR710409 - Synthetic construct Homo sapiens clone CCSBHm_00012202 EXT2 (EXT2) mRNA, encodes complete protein.
JD394936 - Sequence 375960 from Patent EP1572962.
CU679593 - Synthetic construct Homo sapiens gateway clone IMAGE:100020467 5' read EXT2 mRNA.
AK309459 - Homo sapiens cDNA, FLJ99500.
JD020361 - Sequence 1385 from Patent EP1572962.
JD030668 - Sequence 11692 from Patent EP1572962.
JD024879 - Sequence 5903 from Patent EP1572962.
JD033804 - Sequence 14828 from Patent EP1572962.
JD200853 - Sequence 181877 from Patent EP1572962.
JD493101 - Sequence 474125 from Patent EP1572962.
JD316999 - Sequence 298023 from Patent EP1572962.
JD099585 - Sequence 80609 from Patent EP1572962.
JD215196 - Sequence 196220 from Patent EP1572962.
JD262957 - Sequence 243981 from Patent EP1572962.
JD167541 - Sequence 148565 from Patent EP1572962.
JD560798 - Sequence 541822 from Patent EP1572962.
JD040306 - Sequence 21330 from Patent EP1572962.
JD373128 - Sequence 354152 from Patent EP1572962.
JD434448 - Sequence 415472 from Patent EP1572962.
JD551094 - Sequence 532118 from Patent EP1572962.
JD301008 - Sequence 282032 from Patent EP1572962.
JD095720 - Sequence 76744 from Patent EP1572962.
JD348575 - Sequence 329599 from Patent EP1572962.
JD163470 - Sequence 144494 from Patent EP1572962.
JD554470 - Sequence 535494 from Patent EP1572962.
JD312190 - Sequence 293214 from Patent EP1572962.
JD435512 - Sequence 416536 from Patent EP1572962.
JD308260 - Sequence 289284 from Patent EP1572962.
JD285595 - Sequence 266619 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-6558 - heparan sulfate biosynthesis (late stages)
PWY-6564 - heparan sulfate biosynthesis

Reactome (by CSHL, EBI, and GO)

Protein Q93063 (Reactome details) participates in the following event(s):

R-HSA-2022851 EXT1:EXT2 transfer GlcNAc to the heparan chain
R-HSA-2022919 EXT1:EXT2 transfers GlcNAc to the terminal GlcA residue
R-HSA-2022856 EXT1:EXT2 transfers GlcNAc to heparan
R-HSA-2076392 EXT1:EXT2 transfers GlcA to heparan
R-HSA-2022928 HS-GAG biosynthesis
R-HSA-1638091 Heparan sulfate/heparin (HS-GAG) metabolism
R-HSA-1630316 Glycosaminoglycan metabolism
R-HSA-71387 Metabolism of carbohydrates
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B2R5Z6, C9JU51, ENST00000533608.1, ENST00000533608.2, ENST00000533608.3, ENST00000533608.4, ENST00000533608.5, ENST00000533608.6, EXT2 , EXT2_HUMAN, J3KPT2, NM_207122, O15288, Q93063, uc324lsv.1, uc324lsv.2
UCSC ID: ENST00000533608.7_5
RefSeq Accession: NM_207122.2
Protein: Q93063 (aka EXT2_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene EXT2:
ext (Hereditary Multiple Osteochondromas)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.