Human Gene F2R (ENST00000319211.5_4) from GENCODE V47lift37
  Description: coagulation factor II thrombin receptor, transcript variant 1 (from RefSeq NM_001992.5)
Gencode Transcript: ENST00000319211.5_4
Gencode Gene: ENSG00000181104.7_7
Transcript (Including UTRs)
   Position: hg19 chr5:76,011,951-76,031,595 Size: 19,645 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr5:76,012,133-76,029,328 Size: 17,196 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:76,011,951-76,031,595)mRNA (may differ from genome)Protein (425 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PAR1_HUMAN
DESCRIPTION: RecName: Full=Proteinase-activated receptor 1; Short=PAR-1; AltName: Full=Coagulation factor II receptor; AltName: Full=Thrombin receptor; Flags: Precursor;
FUNCTION: High affinity receptor for activated thrombin coupled to G proteins that stimulate phosphoinositide hydrolysis. May play a role in platelets activation and in vascular development.
INTERACTION: Q03135:CAV1; NbExp=3; IntAct=EBI-2803960, EBI-603614; Q9UNN8:PROCR; NbExp=3; IntAct=EBI-2803960, EBI-719705;
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Platelets and vascular endothelial cells.
PTM: A proteolytic cleavage generates a new N-terminus that functions as a tethered ligand.
PTM: Phosphorylated; probably mediating desensitization prior to the uncoupling and internalization of the receptor.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/f2r/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: F2R
Diseases sorted by gene-association score: macrocytic anemia, refractory, due to 5q deletion, somatic (9), cardiomyopathy, hypertrophic, 2 (9), orofacial granulomatosis (8), melanoma metastasis (7), ariboflavinosis (7), bernard-soulier syndrome, type c (7), blood platelet disease (6), leukocyte adhesion deficiency, type iii (5), glanzmann thrombasthenia (5), peroxisomal biogenesis disorders (4), myocardial infarction (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.33 RPKM in Artery - Aorta
Total median expression: 302.70 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -74.40182-0.409 Picture PostScript Text
3' UTR -593.902267-0.262 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR003912 - Protea_act_rcpt
IPR000935 - Thrmbn_rcpt

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

SCOP Domains:
47954 - Cyclin-like
81321 - Family A G protein-coupled receptor-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1NRN - X-ray MuPIT 1NRO - X-ray MuPIT 1NRP - X-ray MuPIT 1NRQ - X-ray MuPIT 1NRR - X-ray 3BEF - X-ray MuPIT 3HKI - X-ray MuPIT 3HKJ - X-ray MuPIT 3LU9 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P25116
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001965 G-protein alpha-subunit binding
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0015057 thrombin-activated receptor activity
GO:0031681 G-protein beta-subunit binding

Biological Process:
GO:0000186 activation of MAPKK activity
GO:0002248 connective tissue replacement involved in inflammatory response wound healing
GO:0003105 negative regulation of glomerular filtration
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006954 inflammatory response
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007200 phospholipase C-activating G-protein coupled receptor signaling pathway
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway
GO:0007529 establishment of synaptic specificity at neuromuscular junction
GO:0007596 blood coagulation
GO:0007599 hemostasis
GO:0008284 positive regulation of cell proliferation
GO:0008285 negative regulation of cell proliferation
GO:0009611 response to wounding
GO:0009653 anatomical structure morphogenesis
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling
GO:0030168 platelet activation
GO:0030193 regulation of blood coagulation
GO:0030194 positive regulation of blood coagulation
GO:0030335 positive regulation of cell migration
GO:0032496 response to lipopolysaccharide
GO:0032651 regulation of interleukin-1 beta production
GO:0032967 positive regulation of collagen biosynthetic process
GO:0035025 positive regulation of Rho protein signal transduction
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043410 positive regulation of MAPK cascade
GO:0043524 negative regulation of neuron apoptotic process
GO:0043547 positive regulation of GTPase activity
GO:0045217 cell-cell junction maintenance
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045907 positive regulation of vasoconstriction
GO:0045987 positive regulation of smooth muscle contraction
GO:0046427 positive regulation of JAK-STAT cascade
GO:0048873 homeostasis of number of cells within a tissue
GO:0051209 release of sequestered calcium ion into cytosol
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway
GO:0051928 positive regulation of calcium ion transport
GO:0051930 regulation of sensory perception of pain
GO:0060155 platelet dense granule organization
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0070493 thrombin-activated receptor signaling pathway
GO:0099553 trans-synaptic signaling by endocannabinoid, modulating synaptic transmission
GO:1900134 negative regulation of renin secretion into blood stream
GO:2000484 positive regulation of interleukin-8 secretion
GO:2000778 positive regulation of interleukin-6 secretion

Cellular Component:
GO:0005576 extracellular region
GO:0005769 early endosome
GO:0005770 late endosome
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0005901 caveola
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031094 platelet dense tubular network
GO:0031594 neuromuscular junction
GO:0045211 postsynaptic membrane


-  Descriptions from all associated GenBank mRNAs
  AK308169 - Homo sapiens cDNA, FLJ98117.
LF384948 - JP 2014500723-A/192451: Polycomb-Associated Non-Coding RNAs.
AK297131 - Homo sapiens cDNA FLJ55303 complete cds, highly similar to Proteinase-activated receptor 1 precursor.
M62424 - Human thrombin receptor mRNA, complete cds.
AK314202 - Homo sapiens cDNA, FLJ94928.
BC051909 - Homo sapiens coagulation factor II (thrombin) receptor, mRNA (cDNA clone MGC:60377 IMAGE:6172703), complete cds.
BC002464 - Homo sapiens coagulation factor II (thrombin) receptor, mRNA (cDNA clone MGC:1197 IMAGE:3343051), complete cds.
CU677972 - Synthetic construct Homo sapiens gateway clone IMAGE:100017241 5' read F2R mRNA.
KJ896792 - Synthetic construct Homo sapiens clone ccsbBroadEn_06186 F2R gene, encodes complete protein.
BT007279 - Homo sapiens coagulation factor II (thrombin) receptor mRNA, complete cds.
DQ895099 - Synthetic construct Homo sapiens clone IMAGE:100009559; FLH181369.01L; RZPDo839C09135D coagulation factor II (thrombin) receptor (F2R) gene, encodes complete protein.
EU176315 - Synthetic construct Homo sapiens clone IMAGE:100006415; FLH181376.01X; RZPDo839F05251D coagulation factor II (thrombin) receptor (F2R) gene, encodes complete protein.
MA620525 - JP 2018138019-A/192451: Polycomb-Associated Non-Coding RNAs.
BC016059 - Homo sapiens coagulation factor II (thrombin) receptor, mRNA (cDNA clone IMAGE:4849569), with apparent retained intron.
JD062829 - Sequence 43853 from Patent EP1572962.
JD514831 - Sequence 495855 from Patent EP1572962.
LF332327 - JP 2014500723-A/139830: Polycomb-Associated Non-Coding RNAs.
JD175328 - Sequence 156352 from Patent EP1572962.
JD458669 - Sequence 439693 from Patent EP1572962.
LF332325 - JP 2014500723-A/139828: Polycomb-Associated Non-Coding RNAs.
MA567904 - JP 2018138019-A/139830: Polycomb-Associated Non-Coding RNAs.
MA567902 - JP 2018138019-A/139828: Polycomb-Associated Non-Coding RNAs.
S76625 - thrombin receptor {clone A} [human, colon adenocarcinoma cells, mRNA Partial, 273 nt].
AY771596 - Homo sapiens cell proliferation-inducing protein 18 mRNA, complete cds.
LF332318 - JP 2014500723-A/139821: Polycomb-Associated Non-Coding RNAs.
JD045341 - Sequence 26365 from Patent EP1572962.
JD129970 - Sequence 110994 from Patent EP1572962.
LF332317 - JP 2014500723-A/139820: Polycomb-Associated Non-Coding RNAs.
JD040136 - Sequence 21160 from Patent EP1572962.
JD110312 - Sequence 91336 from Patent EP1572962.
JD081193 - Sequence 62217 from Patent EP1572962.
JD507031 - Sequence 488055 from Patent EP1572962.
LF332316 - JP 2014500723-A/139819: Polycomb-Associated Non-Coding RNAs.
JD358006 - Sequence 339030 from Patent EP1572962.
JD392388 - Sequence 373412 from Patent EP1572962.
LF332315 - JP 2014500723-A/139818: Polycomb-Associated Non-Coding RNAs.
JD235220 - Sequence 216244 from Patent EP1572962.
LF332314 - JP 2014500723-A/139817: Polycomb-Associated Non-Coding RNAs.
LF332313 - JP 2014500723-A/139816: Polycomb-Associated Non-Coding RNAs.
JD177969 - Sequence 158993 from Patent EP1572962.
JD402510 - Sequence 383534 from Patent EP1572962.
JD375611 - Sequence 356635 from Patent EP1572962.
LF332312 - JP 2014500723-A/139815: Polycomb-Associated Non-Coding RNAs.
JD146424 - Sequence 127448 from Patent EP1572962.
JD141009 - Sequence 122033 from Patent EP1572962.
LF332311 - JP 2014500723-A/139814: Polycomb-Associated Non-Coding RNAs.
LF332310 - JP 2014500723-A/139813: Polycomb-Associated Non-Coding RNAs.
JD048612 - Sequence 29636 from Patent EP1572962.
JD562537 - Sequence 543561 from Patent EP1572962.
JD257047 - Sequence 238071 from Patent EP1572962.
JD421528 - Sequence 402552 from Patent EP1572962.
JD441943 - Sequence 422967 from Patent EP1572962.
JD542270 - Sequence 523294 from Patent EP1572962.
JD196385 - Sequence 177409 from Patent EP1572962.
JD143689 - Sequence 124713 from Patent EP1572962.
JD494939 - Sequence 475963 from Patent EP1572962.
JD529186 - Sequence 510210 from Patent EP1572962.
JD169295 - Sequence 150319 from Patent EP1572962.
JD041310 - Sequence 22334 from Patent EP1572962.
JD388220 - Sequence 369244 from Patent EP1572962.
JD388221 - Sequence 369245 from Patent EP1572962.
JD118364 - Sequence 99388 from Patent EP1572962.
JD175904 - Sequence 156928 from Patent EP1572962.
JD332337 - Sequence 313361 from Patent EP1572962.
JD448321 - Sequence 429345 from Patent EP1572962.
JD351724 - Sequence 332748 from Patent EP1572962.
JD523401 - Sequence 504425 from Patent EP1572962.
JD406734 - Sequence 387758 from Patent EP1572962.
JD461372 - Sequence 442396 from Patent EP1572962.
JD526127 - Sequence 507151 from Patent EP1572962.
JD151764 - Sequence 132788 from Patent EP1572962.
JD405317 - Sequence 386341 from Patent EP1572962.
JD522917 - Sequence 503941 from Patent EP1572962.
MA567895 - JP 2018138019-A/139821: Polycomb-Associated Non-Coding RNAs.
MA567894 - JP 2018138019-A/139820: Polycomb-Associated Non-Coding RNAs.
MA567893 - JP 2018138019-A/139819: Polycomb-Associated Non-Coding RNAs.
MA567892 - JP 2018138019-A/139818: Polycomb-Associated Non-Coding RNAs.
MA567891 - JP 2018138019-A/139817: Polycomb-Associated Non-Coding RNAs.
MA567890 - JP 2018138019-A/139816: Polycomb-Associated Non-Coding RNAs.
MA567889 - JP 2018138019-A/139815: Polycomb-Associated Non-Coding RNAs.
MA567888 - JP 2018138019-A/139814: Polycomb-Associated Non-Coding RNAs.
MA567887 - JP 2018138019-A/139813: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_extrinsicPathway - Extrinsic Prothrombin Activation Pathway
h_Par1Pathway - Thrombin signaling and protease-activated receptors
h_intrinsicPathway - Intrinsic Prothrombin Activation Pathway
h_fibrinolysisPathway - Fibrinolysis Pathway
h_amiPathway - Acute Myocardial Infarction
h_sppaPathway - Aspirin Blocks Signaling Pathway Involved in Platelet Activation

Reactome (by CSHL, EBI, and GO)

Protein P25116 (Reactome details) participates in the following event(s):

R-HSA-418091 Activated PAR1 binds Beta-arrestin-1
R-HSA-418172 Activated PAR1 binds beta-arrestin-2
R-HSA-5607058 Activated protein C:PROCR binds F2R
R-HSA-389463 Proteinase-activated receptors can bind thrombin
R-HSA-114697 Thrombin-mediated activation of Proteinase-activated receptors
R-HSA-418170 Beta-arrestin-1 acts as scaffold for a PAR1 signalling complex
R-HSA-418176 Beta-arrestin-2 acts as scaffold for a PAR1 signalling complex
R-HSA-396941 Thrombin-activated PAR binds G-protein G12/13
R-HSA-396996 Thrombin-activated PAR binds G-protein Gq
R-HSA-397835 Dissociation of the PAR:Gq complex
R-HSA-397891 Dissociation of the PAR:G12/13 complex
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-114558 Gq activation by PAR
R-HSA-114552 G12/13 activation by PAR
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-456926 Thrombin signalling through proteinase activated receptors (PARs)
R-HSA-140875 Common Pathway of Fibrin Clot Formation
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-76002 Platelet activation, signaling and aggregation
R-HSA-140877 Formation of Fibrin Clot (Clotting Cascade)
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-109582 Hemostasis
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: CF2R, ENST00000319211.1, ENST00000319211.2, ENST00000319211.3, ENST00000319211.4, NM_001992, P25116, PAR1, PAR1_HUMAN, Q53XV0, Q96RF7, Q9BUN4, TR, uc317qps.1, uc317qps.2
UCSC ID: ENST00000319211.5_4
RefSeq Accession: NM_001992.5
Protein: P25116 (aka PAR1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.