Human Gene F2RL1 (ENST00000296677.5_4) from GENCODE V47lift37
  Description: F2R like trypsin receptor 1 (from RefSeq NM_005242.6)
Gencode Transcript: ENST00000296677.5_4
Gencode Gene: ENSG00000164251.5_10
Transcript (Including UTRs)
   Position: hg19 chr5:76,114,855-76,131,140 Size: 16,286 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr5:76,115,008-76,129,626 Size: 14,619 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:76,114,855-76,131,140)mRNA (may differ from genome)Protein (397 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PAR2_HUMAN
DESCRIPTION: RecName: Full=Proteinase-activated receptor 2; Short=PAR-2; AltName: Full=Coagulation factor II receptor-like 1; AltName: Full=G-protein coupled receptor 11; AltName: Full=Thrombin receptor-like 1; Contains: RecName: Full=Proteinase-activated receptor 2, alternate cleaved 1; Contains: RecName: Full=Proteinase-activated receptor 2, alternate cleaved 2; Flags: Precursor;
FUNCTION: Receptor for trypsin and trypsin-like enzymes coupled to G proteins. Its function is mediated through the activation of several signaling pathways including phospholipase C (PLC), intracellular calcium, mitogen-activated protein kinase (MAPK), I- kappaB kinase/NF-kappaB and Rho. Can also be transactivated by cleaved F2R/PAR1. Involved in modulation of inflammatory responses and regulation of innate and adaptive immunity, and acts as a sensor for proteolytic enzymes generated during infection. Generally is promoting inflammation. Can signal synergistically with TLR4 and probably TLR2 in inflammatory responses and modulates TLR3 signaling. Has a protective role in establishing the endothelial barrier; the activity involves coagulation factor X. Proposed to have a bronchoprotective role in airway epithelium, but also shown to compromise the airway epithelial barrier by interrupting E-cadherin adhesion. Involved in the regulation of vascular tone; activation results in hypotension presumably mediated by vasodilation. Associates with a subset of G proteins alpha subunits such as G alpha-q, G alpha-11, G alpha-14, G alpha- 12 and G alpha-13, but probably not with G(o) alpha, G(i) subunit alpha-1 and G(i) subunit alpha-2. However, according to PubMed:21627585 can signal through G(i) subunit alpha. Believed to be a class B receptor which internalizes as a complex with arrestin and traffic with it to endosomal vesicles, presumably as desensitized receptor, for extended periods of time. Mediates inhibition of TNF-alpha stimulated JNK phosphorylation via coupling to G alpha-q/11; the function involves dissociation of RIPK1 and TRADD from TNFR1. Mediates phosphorylation of nuclear factor NF-kappa-B RELA subunit at 'Ser-536'; the function involves IKBKB and is predominantly independent of G proteins. Involved in cellular migration. Involved in cytoskeletal rearrangement and chemotaxis through beta-arrestin-promoted scaffolds; the function is independent of G alpha-q/11 and involves promotion of cofilin dephosphoryltaion and actin filament severing. Induces redistribution of COPS5 from the plasma membrane to the cytosol and activation of the JNK cascade is mediated by COPS5. Involved in the recruitment of leukocytes to the sites of inflammation and is the major PAR receptor capable of modulating eosinophil function such as proinflammatory cytokine secretion, superoxide production and degranulation. During inflammation promotes dendritic cell maturation, trafficking to the lymph nodes and subsequent T-cell activation. Involved in antimicrobial response of innate immnune cells; activation enhances phagocytosis of Gram- positive and killing of Gram-negative bacteria. Acts synergistically with interferon-gamma in enhancing antiviral responses. Implicated in a number of acute and chronic inflammatory diseases such as of the joints, lungs, brain, gastrointestinal tract, periodontium, skin, and vascular systems, and in autoimmune disorders.
SUBUNIT: Interacts with TLR4, COPS5 and TMED2. Interacts with GNAQ, GNA11, GNA12, GNA13 and GNA14 (By similarity).
INTERACTION: P22681:CBL; NbExp=3; IntAct=EBI-4303189, EBI-518228; Q92905:COPS5; NbExp=8; IntAct=EBI-4303189, EBI-594661; Q14868:EPR1; NbExp=4; IntAct=EBI-4303189, EBI-4309771; Q15363:TMED2; NbExp=6; IntAct=EBI-4303189, EBI-998485;
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Widely expressed in tissues with especially high levels in pancreas, liver, kidney, small intestine, and colon. Moderate expression is detected in many organs, but none in brain or skeletal muscle.
PTM: A proteolytic cleavage generates a new N-terminus that functions as a tethered ligand. Activating serine proteases include trypsin, mast cell tryptase, coagulation factors VII and Xa, myeloblastin/PRTN3 and membrane-type serine protease 1/ST14. Proposed subsequent cleaveage by serine proteases is leading to receptor deactivation and include neutrophil elastase and cathepsin G. At least in part, implicated proteases are also shown to activate the receptor; the glycosylation status of the receptor is thought to contribute to the difference. In addition to conventional trypsin-like proteases is proposed to be activated by other proteases and glycosidases derived from bacteria, fungi and insects: serine protease allergens such as dust mite Der p3 and Der p9 and mold Pen c13, Porphyromonas gingivalis arginine- specific (trypsin-like) cysteine proteinases called gingipains, Streptomyces griseus exogenous chitinase, and an Alternaria alternata aspartate protease. Cleavage by the Alternaria alternata aspartate protease generates non-conventional processed forms.
PTM: N-glycosylated and sialylated.
PTM: Multiple phosphorylated on serine and threonine residues in the cytoplasmic region upon receptor activation; required for receptor desensitization and recruitment of beta-arrestin.
PTM: Monoubiquitinated by CBL at the plasma membrane and in early endosomes; not required for receptor endocytosis but for translocation to late endosomes or lysosomes. Deubiquitination involves STAMBP and USP8; required for lysosomal trafficking and receptor degradation.
MISCELLANEOUS: Synthetic PAR agonist peptides (APs) that mimic the first six amino acids of the newly formed N-terminus activate the native, uncleaved receptor nonenzymatically by binding directly to the corresponding second extracellular loop to mediate signaling.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
WEB RESOURCE: Name=Wikipedia; Note=Protease-activated receptor entry; URL="http://en.wikipedia.org/wiki/Protease-activated_receptor";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/f2rl1/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: F2RL1
Diseases sorted by gene-association score: orofacial granulomatosis (9), pulmonary vein stenosis (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 29.38 RPKM in Colon - Transverse
Total median expression: 166.46 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -68.00153-0.444 Picture PostScript Text
3' UTR -399.701514-0.264 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR002281 - Pro_rcpt_2
IPR003912 - Protea_act_rcpt

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)
PF10324 - Serpentine type 7TM GPCR chemoreceptor Srw

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on P55085
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001965 G-protein alpha-subunit binding
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0015057 thrombin-activated receptor activity
GO:0031681 G-protein beta-subunit binding
GO:0038023 signaling receptor activity

Biological Process:
GO:0002286 T cell activation involved in immune response
GO:0002376 immune system process
GO:0002690 positive regulation of leukocyte chemotaxis
GO:0002741 positive regulation of cytokine secretion involved in immune response
GO:0003104 positive regulation of glomerular filtration
GO:0006954 inflammatory response
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0007596 blood coagulation
GO:0010804 negative regulation of tumor necrosis factor-mediated signaling pathway
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling
GO:0030193 regulation of blood coagulation
GO:0030335 positive regulation of cell migration
GO:0030836 positive regulation of actin filament depolymerization
GO:0031274 positive regulation of pseudopodium assembly
GO:0032930 positive regulation of superoxide anion generation
GO:0034137 positive regulation of toll-like receptor 2 signaling pathway
GO:0034140 negative regulation of toll-like receptor 3 signaling pathway
GO:0034141 positive regulation of toll-like receptor 3 signaling pathway
GO:0034145 positive regulation of toll-like receptor 4 signaling pathway
GO:0035025 positive regulation of Rho protein signal transduction
GO:0035926 chemokine (C-C motif) ligand 2 secretion
GO:0042119 neutrophil activation
GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043311 positive regulation of eosinophil degranulation
GO:0043547 positive regulation of GTPase activity
GO:0045087 innate immune response
GO:0045217 cell-cell junction maintenance
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046328 regulation of JNK cascade
GO:0046329 negative regulation of JNK cascade
GO:0046330 positive regulation of JNK cascade
GO:0050702 interleukin-1 beta secretion
GO:0050900 leukocyte migration
GO:0050921 positive regulation of chemotaxis
GO:0050927 positive regulation of positive chemotaxis
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway
GO:0051607 defense response to virus
GO:0060100 positive regulation of phagocytosis, engulfment
GO:0061028 establishment of endothelial barrier
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0070493 thrombin-activated receptor signaling pathway
GO:0070661 leukocyte proliferation
GO:0070963 positive regulation of neutrophil mediated killing of gram-negative bacterium
GO:0072608 interleukin-10 secretion
GO:0072643 interferon-gamma secretion
GO:0090195 chemokine secretion
GO:0090198 negative regulation of chemokine secretion
GO:0097029 mature conventional dendritic cell differentiation
GO:1900135 positive regulation of renin secretion into blood stream
GO:2000484 positive regulation of interleukin-8 secretion
GO:2000778 positive regulation of interleukin-6 secretion

Cellular Component:
GO:0005769 early endosome
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031143 pseudopodium


-  Descriptions from all associated GenBank mRNAs
  LF384946 - JP 2014500723-A/192449: Polycomb-Associated Non-Coding RNAs.
BC018130 - Homo sapiens coagulation factor II (thrombin) receptor-like 1, mRNA (cDNA clone MGC:9298 IMAGE:3895653), complete cds.
U34038 - Human proteinase-activated receptor-2 mRNA, complete cds.
BC012453 - Homo sapiens coagulation factor II (thrombin) receptor-like 1, mRNA (cDNA clone MGC:9549 IMAGE:3857382), complete cds.
AY336105 - Homo sapiens protease-activated receptor 2 (F2RL1) mRNA, complete cds.
JD230927 - Sequence 211951 from Patent EP1572962.
JD407348 - Sequence 388372 from Patent EP1572962.
KJ891133 - Synthetic construct Homo sapiens clone ccsbBroadEn_00527 F2RL1 gene, encodes complete protein.
KJ896793 - Synthetic construct Homo sapiens clone ccsbBroadEn_06187 F2RL1 gene, encodes complete protein.
CU676194 - Synthetic construct Homo sapiens gateway clone IMAGE:100017182 5' read F2RL1 mRNA.
CU680330 - Synthetic construct Homo sapiens gateway clone IMAGE:100019227 5' read F2RL1 mRNA.
BT009856 - Homo sapiens coagulation factor II (thrombin) receptor-like 1 mRNA, complete cds.
DQ890966 - Synthetic construct clone IMAGE:100003596; FLH168076.01X; RZPDo839B1192D coagulation factor II (thrombin) receptor-like 1 (F2RL1) gene, encodes complete protein.
DQ894139 - Synthetic construct Homo sapiens clone IMAGE:100008599; FLH168072.01L; RZPDo839B1191D coagulation factor II (thrombin) receptor-like 1 (F2RL1) gene, encodes complete protein.
LF332306 - JP 2014500723-A/139809: Polycomb-Associated Non-Coding RNAs.
LF332305 - JP 2014500723-A/139808: Polycomb-Associated Non-Coding RNAs.
LF332304 - JP 2014500723-A/139807: Polycomb-Associated Non-Coding RNAs.
LF332299 - JP 2014500723-A/139802: Polycomb-Associated Non-Coding RNAs.
LF332297 - JP 2014500723-A/139800: Polycomb-Associated Non-Coding RNAs.
LF332296 - JP 2014500723-A/139799: Polycomb-Associated Non-Coding RNAs.
JD369561 - Sequence 350585 from Patent EP1572962.
U67058 - Human proteinase activated receptor-2 mRNA, 3'UTR.
LF332295 - JP 2014500723-A/139798: Polycomb-Associated Non-Coding RNAs.
LF332294 - JP 2014500723-A/139797: Polycomb-Associated Non-Coding RNAs.
LF332292 - JP 2014500723-A/139795: Polycomb-Associated Non-Coding RNAs.
JD426599 - Sequence 407623 from Patent EP1572962.
JD380917 - Sequence 361941 from Patent EP1572962.
JD135932 - Sequence 116956 from Patent EP1572962.
JD135935 - Sequence 116959 from Patent EP1572962.
JD403625 - Sequence 384649 from Patent EP1572962.
JD238494 - Sequence 219518 from Patent EP1572962.
JD238495 - Sequence 219519 from Patent EP1572962.
LF332291 - JP 2014500723-A/139794: Polycomb-Associated Non-Coding RNAs.
LF332290 - JP 2014500723-A/139793: Polycomb-Associated Non-Coding RNAs.
MA620523 - JP 2018138019-A/192449: Polycomb-Associated Non-Coding RNAs.
MA567883 - JP 2018138019-A/139809: Polycomb-Associated Non-Coding RNAs.
MA567882 - JP 2018138019-A/139808: Polycomb-Associated Non-Coding RNAs.
MA567881 - JP 2018138019-A/139807: Polycomb-Associated Non-Coding RNAs.
MA567876 - JP 2018138019-A/139802: Polycomb-Associated Non-Coding RNAs.
MA567874 - JP 2018138019-A/139800: Polycomb-Associated Non-Coding RNAs.
MA567873 - JP 2018138019-A/139799: Polycomb-Associated Non-Coding RNAs.
MA567872 - JP 2018138019-A/139798: Polycomb-Associated Non-Coding RNAs.
MA567871 - JP 2018138019-A/139797: Polycomb-Associated Non-Coding RNAs.
MA567869 - JP 2018138019-A/139795: Polycomb-Associated Non-Coding RNAs.
MA567868 - JP 2018138019-A/139794: Polycomb-Associated Non-Coding RNAs.
MA567867 - JP 2018138019-A/139793: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P55085 (Reactome details) participates in the following event(s):

R-HSA-389463 Proteinase-activated receptors can bind thrombin
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000296677.1, ENST00000296677.2, ENST00000296677.3, ENST00000296677.4, GPR11, NM_005242, P55085, PAR2, PAR2_HUMAN, Q13317, Q13346, Q53XJ8, uc317lvw.1, uc317lvw.2
UCSC ID: ENST00000296677.5_4
RefSeq Accession: NM_005242.6
Protein: P55085 (aka PAR2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.