Human Gene FADD (ENST00000301838.5_4) from GENCODE V47lift37
  Description: Fas associated via death domain (from RefSeq NM_003824.4)
Gencode Transcript: ENST00000301838.5_4
Gencode Gene: ENSG00000168040.5_5
Transcript (Including UTRs)
   Position: hg19 chr11:70,049,402-70,053,496 Size: 4,095 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr11:70,049,566-70,052,579 Size: 3,014 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:70,049,402-70,053,496)mRNA (may differ from genome)Protein (208 aa)
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-  Comments and Description Text from UniProtKB
  ID: FADD_HUMAN
DESCRIPTION: RecName: Full=Protein FADD; AltName: Full=FAS-associated death domain protein; AltName: Full=FAS-associating death domain-containing protein; AltName: Full=Growth-inhibiting gene 3 protein; AltName: Full=Mediator of receptor induced toxicity;
FUNCTION: Apoptotic adaptor molecule that recruits caspase-8 or caspase-10 to the activated Fas (CD95) or TNFR-1 receptors. The resulting aggregate called the death-inducing signaling complex (DISC) performs caspase-8 proteolytic activation. Active caspase-8 initiates the subsequent cascade of caspases mediating apoptosis. Involved in interferon-mediated antiviral immune response, playing a role in the positive regulation of interferon signaling.
SUBUNIT: Can self-associate. Interacts with CFLAR, PEA15 and MBD4. When phosphorylated, part of a complex containing HIPK3 and FAS. May interact with MAVS/IPS1. Interacts with MOCV v-CFLAR protein and LRDD. Interacts (via death domain) with FAS (via death domain). Interacts with CASP8.
INTERACTION: Self; NbExp=3; IntAct=EBI-494804, EBI-494804; Q14790:CASP8; NbExp=30; IntAct=EBI-494804, EBI-78060; Q14790-1:CASP8; NbExp=5; IntAct=EBI-494804, EBI-288309; Q14790-5:CASP8; NbExp=4; IntAct=EBI-494804, EBI-288326; P25445:FAS; NbExp=30; IntAct=EBI-494804, EBI-494743; P25446:Fas (xeno); NbExp=5; IntAct=EBI-494804, EBI-296206; O95243:MBD4; NbExp=6; IntAct=EBI-494804, EBI-348011; Q99836:MYD88; NbExp=3; IntAct=EBI-494804, EBI-447677; Q99497:PARK7; NbExp=9; IntAct=EBI-494804, EBI-1164361; P53350:PLK1; NbExp=9; IntAct=EBI-494804, EBI-476768; Q13546:RIPK1; NbExp=5; IntAct=EBI-494804, EBI-358507;
TISSUE SPECIFICITY: Expressed in a wide variety of tissues, except for peripheral blood mononuclear leukocytes.
DOMAIN: Contains a death domain involved in the binding of the corresponding domain within Fas receptor.
DOMAIN: The interaction between the FAS and FADD death domains is crucial for the formation of the death-inducing signaling complex (DISC).
DISEASE: Defects in FADD are the cause of infections recurrent associated with encephalopathy hepatic dysfunction and cardiovascular malformations (IEHDCM) [MIM:613759]. A condition with biological features of autoimmune lymphoproliferative syndrome such as high-circulating CD4(-)CD8(-)TCR-alpha-beta(+) T- cell counts, and elevated IL10 and FASL levels. Affected individuals suffer from recurrent, stereotypical episodes of fever, encephalopathy, and mild liver dysfunction sometimes accompanied by generalized seizures. The episodes can be triggered by varicella zoster virus (VZV), measles mumps rubella (MMR) attenuated vaccine, parainfluenza virus, and Epstein-Barr virus (EBV).
SIMILARITY: Contains 1 death domain.
SIMILARITY: Contains 1 DED (death effector) domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/fadd/";

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: FADD
Diseases sorted by gene-association score: infections, recurrent, with encephalopathy, hepatic dysfunction, and cardiovascular malformations* (1650), otodental dysplasia* (18), autoimmune lymphoproliferative syndrome (14), oral cavity cancer (8), alzheimer disease mitochondrial (7), molluscum contagiosum (7), inner ear disease (6), post-transplant lymphoproliferative disease (5), kaposi sarcoma (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.96 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 411.30 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -72.50164-0.442 Picture PostScript Text
3' UTR -327.00917-0.357 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000488 - Death
IPR011029 - DEATH-like
IPR001875 - DED
IPR016729 - FADD

Pfam Domains:
PF00531 - Death domain
PF01335 - Death effector domain

SCOP Domains:
47986 - DEATH domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1A1W - NMR MuPIT 1A1Z - NMR MuPIT 1E3Y - NMR MuPIT 1E41 - NMR MuPIT 2GF5 - NMR MuPIT 3EZQ - X-ray MuPIT 3OQ9 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q13158
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0002020 protease binding
GO:0005123 death receptor binding
GO:0005164 tumor necrosis factor receptor binding
GO:0005515 protein binding
GO:0032813 tumor necrosis factor receptor superfamily binding
GO:0033612 receptor serine/threonine kinase binding
GO:0035877 death effector domain binding
GO:0042802 identical protein binding
GO:0044877 macromolecular complex binding
GO:0089720 caspase binding

Biological Process:
GO:0001916 positive regulation of T cell mediated cytotoxicity
GO:0002376 immune system process
GO:0002821 positive regulation of adaptive immune response
GO:0006915 apoptotic process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0008625 extrinsic apoptotic signaling pathway via death domain receptors
GO:0016032 viral process
GO:0032729 positive regulation of interferon-gamma production
GO:0032757 positive regulation of interleukin-8 production
GO:0032760 positive regulation of tumor necrosis factor production
GO:0033077 T cell differentiation in thymus
GO:0034138 toll-like receptor 3 signaling pathway
GO:0035666 TRIF-dependent toll-like receptor signaling pathway
GO:0036462 TRAIL-activated apoptotic signaling pathway
GO:0042104 positive regulation of activated T cell proliferation
GO:0042220 response to cocaine
GO:0042981 regulation of apoptotic process
GO:0043029 T cell homeostasis
GO:0043065 positive regulation of apoptotic process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043278 response to morphine
GO:0045087 innate immune response
GO:0045651 positive regulation of macrophage differentiation
GO:0045862 positive regulation of proteolysis
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048148 behavioral response to cocaine
GO:0048535 lymph node development
GO:0048536 spleen development
GO:0048538 thymus development
GO:0051607 defense response to virus
GO:0060340 positive regulation of type I interferon-mediated signaling pathway
GO:0060544 regulation of necroptotic process
GO:0060546 negative regulation of necroptotic process
GO:0070236 negative regulation of activation-induced cell death of T cells
GO:0071260 cellular response to mechanical stimulus
GO:0071550 death-inducing signaling complex assembly
GO:0097049 motor neuron apoptotic process
GO:0097190 apoptotic signaling pathway
GO:0097191 extrinsic apoptotic signaling pathway
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand
GO:0097202 activation of cysteine-type endopeptidase activity
GO:0097527 necroptotic signaling pathway
GO:1902041 regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902042 negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902043 positive regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2000454 positive regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation
GO:2001238 positive regulation of extrinsic apoptotic signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0031264 death-inducing signaling complex
GO:0031265 CD95 death-inducing signaling complex
GO:0032991 macromolecular complex
GO:0043005 neuron projection
GO:0044297 cell body
GO:0045121 membrane raft
GO:0097342 ripoptosome


-  Descriptions from all associated GenBank mRNAs
  JA482180 - Sequence 163 from Patent WO2011072091.
JE980472 - Sequence 163 from Patent EP2862929.
LF384321 - JP 2014500723-A/191824: Polycomb-Associated Non-Coding RNAs.
AK291005 - Homo sapiens cDNA FLJ76615 complete cds, highly similar to Homo sapiens Fas (TNFRSF6)-associated via death domain (FADD), mRNA.
AK293320 - Homo sapiens cDNA FLJ56686 complete cds, moderately similar to FADD protein.
JD243473 - Sequence 224497 from Patent EP1572962.
BC000334 - Homo sapiens Fas (TNFRSF6)-associated via death domain, mRNA (cDNA clone MGC:8528 IMAGE:2822581), complete cds.
X84709 - H.sapiens mRNA for mediator of receptor-induced toxicity.
AX138456 - Sequence 17 from Patent EP1097993.
BD015624 - Slidable functional chimeric molecule.
U24231 - Human Fas-associating death domain-containing protein mRNA, complete cds.
BC025733 - Homo sapiens Fas (TNFRSF6)-associated via death domain, mRNA (cDNA clone IMAGE:5203692).
JD217392 - Sequence 198416 from Patent EP1572962.
EU176185 - Synthetic construct Homo sapiens clone IMAGE:100006343; FLH165492.01X; RZPDo839E03250D Fas (TNFRSF6)-associated via death domain (FADD) gene, encodes complete protein.
AB587588 - Synthetic construct DNA, clone: pF1KB8910, Homo sapiens FADD gene for Fas (TNFRSF6)-associated via death domain, without stop codon, in Flexi system.
KJ892618 - Synthetic construct Homo sapiens clone ccsbBroadEn_02012 FADD gene, encodes complete protein.
CR456738 - Homo sapiens full open reading frame cDNA clone RZPDo834F046D for gene FADD, Fas (TNFRSF6)-associated via death domain; complete cds, incl. stopcodon.
BT006927 - Homo sapiens Fas (TNFRSF6)-associated via death domain mRNA, complete cds.
AY423721 - Homo sapiens growth-inhibiting gene 3 protein mRNA, complete cds.
LF370888 - JP 2014500723-A/178391: Polycomb-Associated Non-Coding RNAs.
JD476223 - Sequence 457247 from Patent EP1572962.
JD475626 - Sequence 456650 from Patent EP1572962.
JD418334 - Sequence 399358 from Patent EP1572962.
JD486501 - Sequence 467525 from Patent EP1572962.
JD436129 - Sequence 417153 from Patent EP1572962.
JD107239 - Sequence 88263 from Patent EP1572962.
JD534287 - Sequence 515311 from Patent EP1572962.
JD451016 - Sequence 432040 from Patent EP1572962.
JD421005 - Sequence 402029 from Patent EP1572962.
JD516998 - Sequence 498022 from Patent EP1572962.
JD248295 - Sequence 229319 from Patent EP1572962.
JD368829 - Sequence 349853 from Patent EP1572962.
JD557430 - Sequence 538454 from Patent EP1572962.
JD328521 - Sequence 309545 from Patent EP1572962.
JD329589 - Sequence 310613 from Patent EP1572962.
JD498633 - Sequence 479657 from Patent EP1572962.
JD111821 - Sequence 92845 from Patent EP1572962.
JD329601 - Sequence 310625 from Patent EP1572962.
JD173139 - Sequence 154163 from Patent EP1572962.
JD501273 - Sequence 482297 from Patent EP1572962.
JD097255 - Sequence 78279 from Patent EP1572962.
MA619898 - JP 2018138019-A/191824: Polycomb-Associated Non-Coding RNAs.
MA606465 - JP 2018138019-A/178391: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_RELAPathway - Acetylation and Deacetylation of RelA in The Nucleus
h_tnfr1Pathway - TNFR1 Signaling Pathway
h_deathPathway - Induction of apoptosis through DR3 and DR4/5 Death Receptors
h_fasPathway - FAS signaling pathway ( CD95 )
h_HivnefPathway - HIV-I Nef: negative effector of Fas and TNF
h_ceramidePathway - Ceramide Signaling Pathway
h_nfkbPathway - NF-kB Signaling Pathway
h_soddPathway - SODD/TNFR1 Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein Q13158 (Reactome details) participates in the following event(s):

R-HSA-75187 TRAIL:TRAIL receptor trimers bind FADD
R-HSA-83650 FasL:Fas binds FADD
R-HSA-140978 TRADD:TRAF2:RIP1 complex binds FADD
R-HSA-168934 MAVS interacts with RIPK1 and FADD
R-HSA-2562541 TLR4-induced ripoptosome assembly
R-HSA-9013889 TLR3-induced ripoptosome assembly
R-HSA-83586 FASL:FAS Receptor Trimer:FADD complex binds pro-Caspase-8
R-HSA-141310 FASL:FAS Receptor Trimer:FADD complex binds procaspase-10
R-HSA-75240 TRADD:TRAF2:RIP1:FADD complex binds Pro-Caspase 8
R-HSA-933526 Recruitment of caspase-8 and -10 to FADD complex
R-HSA-2562564 Caspase-8 processing within TLR4 complex
R-HSA-75146 TRAIL:TRAIL Receptor Trimer:FADD complex binds procaspase-8
R-HSA-141316 TRAIL:TRAIL-Receptor2 Trimer:FADD complex binds procaspase-10
R-HSA-9013895 Caspase-8 processing within TLR3 complex
R-HSA-73945 FAS-mediated dimerization of procaspase-8
R-HSA-3465459 FLIP(L) and procaspase-8 form heterodimer in FasL/CD95 signaling
R-HSA-141159 TNF-mediated dimerization of procaspase-8
R-HSA-3371360 FLIP(L) and procaspase-8 form heterodimer in TNF signaling
R-HSA-933523 Dimerzation of procaspase-8, procaspase-10
R-HSA-141156 TRAIL-mediated dimerization of procaspase-8
R-HSA-3371359 FLIP(L) and procaspase-8 form heterodimer in TRAIL signaling
R-HSA-3465429 FLIP(S) and procaspase-8 form heterodimer
R-HSA-5675456 FLIP(L) and procaspase-8 form heterodimer
R-HSA-933532 Processing of caspases
R-HSA-933539 Recruitment of IKK complex
R-HSA-75158 TRAIL signaling
R-HSA-75157 FasL/ CD95L signaling
R-HSA-5357786 TNFR1-induced proapoptotic signaling
R-HSA-933543 NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10
R-HSA-2562578 TRIF-mediated programmed cell death
R-HSA-9013957 TLR3-mediated TICAM1-dependent programmed cell death
R-HSA-140534 Ligand-dependent caspase activation
R-HSA-73887 Death Receptor Signalling
R-HSA-75893 TNF signaling
R-HSA-168928 DDX58/IFIH1-mediated induction of interferon-alpha/beta
R-HSA-937061 TRIF(TICAM1)-mediated TLR4 signaling
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade
R-HSA-69416 Dimerization of procaspase-8
R-HSA-3371378 Regulation by c-FLIP
R-HSA-5357769 Caspase activation via extrinsic apoptotic signalling pathway
R-HSA-162582 Signal Transduction
R-HSA-168249 Innate Immune System
R-HSA-166166 MyD88-independent TLR4 cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-5218900 CASP8 activity is inhibited
R-HSA-109581 Apoptosis
R-HSA-168256 Immune System
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-5675482 Regulation of necroptotic cell death
R-HSA-5357801 Programmed Cell Death
R-HSA-5213460 RIPK1-mediated regulated necrosis
R-HSA-5218859 Regulated Necrosis

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000301838.1, ENST00000301838.2, ENST00000301838.3, ENST00000301838.4, FADD , FADD_HUMAN, GIG3 , MORT1 , NM_003824, Q13158, Q14866, Q6IBR4, uc317mxb.1, uc317mxb.2
UCSC ID: ENST00000301838.5_4
RefSeq Accession: NM_003824.4
Protein: Q13158 (aka FADD_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.