Human Gene FAM13B (ENST00000689681.1_7) from GENCODE V47lift37

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Description: family with sequence similarity 13 member B, transcript variant 26 (from RefSeq NR_169825.1)
Gencode Transcript: ENST00000689681.1_7
Gencode Gene: ENSG00000031003.11_16
Transcript (Including UTRs)
Position: hg19 chr5:137,273,649-137,368,768 Size: 95,120 Total Exon Count: 24 Strand: -
Coding Region
Position: hg19 chr5:137,275,914-137,354,800 Size: 78,887 Coding Exon Count: 22

Page Index	Sequence and Links	Primers	CTD	Gene Alleles	Microarray Expression
RNA Structure	Other Species	mRNA Descriptions	Other Names	Model Information	Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr5:137,273,649-137,368,768)			mRNA (may differ from genome)		Protein (937 aa)
Gene Sorter	Genome Browser	Other Species FASTA	Gene interactions	Table Schema	AlphaFold
BioGPS	Ensembl	ExonPrimer	GeneCards	HGNC	MGI
PubMed	UniProtKB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide D016604 Aflatoxin B1 D002994 Clofibrate D016572 Cyclosporine D006830 Hydralazine D058185 Magnetite Nanoparticles D010634 Phenobarbital D011794 Quercetin D012402 Rotenone D004113 Succimer more ... click here to view the complete list

Common Gene Haplotype Alleles


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Microarray Expression Data


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mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-176.50	500	-0.353	Picture	PostScript	Text
3' UTR	-564.99	2265	-0.249	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog
Gene Details	Gene Details
Gene Sorter	Gene Sorter
	RGD	Ensembl

Descriptions from all associated GenBank mRNAs


	LF385245 - JP 2014500723-A/192748: Polycomb-Associated Non-Coding RNAs. AF251038 - Homo sapiens GAP-like protein (N61) mRNA, complete cds. BC041335 - Homo sapiens chromosome 5 open reading frame 5, mRNA (cDNA clone IMAGE:5272612). BC048965 - Homo sapiens family with sequence similarity 13, member B, mRNA (cDNA clone MGC:57159 IMAGE:5265611), complete cds. AK314224 - Homo sapiens cDNA, FLJ94962. MA620822 - JP 2018138019-A/192748: Polycomb-Associated Non-Coding RNAs. AF157316 - Homo sapiens kinesin heavy chain-like protein (KHCHP) mRNA, complete cds. AL833699 - Homo sapiens mRNA; cDNA DKFZp667F249 (from clone DKFZp667F249). JD509938 - Sequence 490962 from Patent EP1572962. LF343043 - JP 2014500723-A/150546: Polycomb-Associated Non-Coding RNAs. JD110587 - Sequence 91611 from Patent EP1572962. JD187931 - Sequence 168955 from Patent EP1572962. JD475760 - Sequence 456784 from Patent EP1572962. JD424400 - Sequence 405424 from Patent EP1572962. JD552682 - Sequence 533706 from Patent EP1572962. BC056887 - Homo sapiens family with sequence similarity 13, member B, mRNA (cDNA clone MGC:65022 IMAGE:6148274), complete cds. JD162751 - Sequence 143775 from Patent EP1572962. JD250461 - Sequence 231485 from Patent EP1572962. JD556558 - Sequence 537582 from Patent EP1572962. JD556178 - Sequence 537202 from Patent EP1572962. JD404057 - Sequence 385081 from Patent EP1572962. JD184681 - Sequence 165705 from Patent EP1572962. JD188459 - Sequence 169483 from Patent EP1572962. JD318904 - Sequence 299928 from Patent EP1572962. JD271464 - Sequence 252488 from Patent EP1572962. JD359115 - Sequence 340139 from Patent EP1572962. JD516183 - Sequence 497207 from Patent EP1572962. JD050291 - Sequence 31315 from Patent EP1572962. JD350422 - Sequence 331446 from Patent EP1572962. JD539128 - Sequence 520152 from Patent EP1572962. JD176585 - Sequence 157609 from Patent EP1572962. JD350645 - Sequence 331669 from Patent EP1572962. JD130954 - Sequence 111978 from Patent EP1572962. JD306094 - Sequence 287118 from Patent EP1572962. JD556682 - Sequence 537706 from Patent EP1572962. JD410192 - Sequence 391216 from Patent EP1572962. JD283566 - Sequence 264590 from Patent EP1572962. JD521652 - Sequence 502676 from Patent EP1572962. EU832118 - Synthetic construct Homo sapiens clone HAIB:100067147; DKFZo008C0825 chromosome 5 open reading frame 5 protein (C5orf5) gene, encodes complete protein. EU832212 - Synthetic construct Homo sapiens clone HAIB:100067241; DKFZo004C0826 chromosome 5 open reading frame 5 protein (C5orf5) gene, encodes complete protein. AB384671 - Synthetic construct DNA, clone: pF1KB0031, Homo sapiens C5orf5 gene for C5orf5 protein, complete cds, without stop codon, in Flexi system. AK130245 - Homo sapiens cDNA FLJ26735 fis, clone PRS00519. LF343044 - JP 2014500723-A/150547: Polycomb-Associated Non-Coding RNAs. LF343045 - JP 2014500723-A/150548: Polycomb-Associated Non-Coding RNAs. LF343048 - JP 2014500723-A/150551: Polycomb-Associated Non-Coding RNAs. LF343051 - JP 2014500723-A/150554: Polycomb-Associated Non-Coding RNAs. LF343058 - JP 2014500723-A/150561: Polycomb-Associated Non-Coding RNAs. LF343060 - JP 2014500723-A/150563: Polycomb-Associated Non-Coding RNAs. LF343062 - JP 2014500723-A/150565: Polycomb-Associated Non-Coding RNAs. JD155159 - Sequence 136183 from Patent EP1572962. MA578620 - JP 2018138019-A/150546: Polycomb-Associated Non-Coding RNAs. MA578621 - JP 2018138019-A/150547: Polycomb-Associated Non-Coding RNAs. MA578622 - JP 2018138019-A/150548: Polycomb-Associated Non-Coding RNAs. MA578625 - JP 2018138019-A/150551: Polycomb-Associated Non-Coding RNAs. MA578628 - JP 2018138019-A/150554: Polycomb-Associated Non-Coding RNAs. MA578635 - JP 2018138019-A/150561: Polycomb-Associated Non-Coding RNAs. MA578637 - JP 2018138019-A/150563: Polycomb-Associated Non-Coding RNAs. MA578639 - JP 2018138019-A/150565: Polycomb-Associated Non-Coding RNAs. JD440527 - Sequence 421551 from Patent EP1572962. JD484786 - Sequence 465810 from Patent EP1572962. JD390176 - Sequence 371200 from Patent EP1572962. JD227538 - Sequence 208562 from Patent EP1572962.

Other Names for This Gene


	Alternate Gene Symbols: A0A8I5KSB9, A0A8I5KSB9_HUMAN, FAM13B , NR_169825, uc330tsj.1, uc330tsj.2 UCSC ID: ENST00000689681.1_7 RefSeq Accession: NM_001385994.1

Gene Model Information


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Methods, Credits, and Use Restrictions


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