Human Gene PSME3IP1 (ENST00000309137.13_7) from GENCODE V47lift37
Description: proteasome activator subunit 3 interacting protein 1, transcript variant 20 (from RefSeq NM_024946.4)
Gencode Transcript: ENST00000309137.13_7
Gencode Gene: ENSG00000172775.18_18
Transcript (Including UTRs)
Position: hg19 chr16:57,186,378-57,219,951 Size: 33,574 Total Exon Count: 7 Strand: -
Coding Region
Position: hg19 chr16:57,188,202-57,207,766 Size: 19,565 Coding Exon Count: 6
Data last updated at UCSC: 2024-08-22 23:36:26
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: F192A_HUMAN
DESCRIPTION: RecName: Full=Protein FAM192A; AltName: Full=NEFA-interacting nuclear protein NIP30;
SUBCELLULAR LOCATION: Nucleus (Potential).
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR019331 - Nefa_Nip30_N
Pfam Domains: PF10187 - FAM192A/Fyv6, N-terminal domain
ModBase Predicted Comparative 3D Structure on Q9GZU8
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK023291 - Homo sapiens cDNA FLJ13229 fis, clone OVARC1000106.JD292115 - Sequence 273139 from Patent EP1572962.JD065792 - Sequence 46816 from Patent EP1572962.JD432754 - Sequence 413778 from Patent EP1572962.JD555575 - Sequence 536599 from Patent EP1572962.JD449418 - Sequence 430442 from Patent EP1572962.JD093012 - Sequence 74036 from Patent EP1572962.AK025452 - Homo sapiens cDNA: FLJ21799 fis, clone HEP00611.AF271785 - Homo sapiens CDA018 mRNA, complete cds.AF212249 - Homo sapiens CDA10 mRNA, complete cds.AF356585 - Homo sapiens NEFA-interacting nuclear protein NIP30 (NIP30) mRNA, complete cds.BC071952 - Homo sapiens NEFA-interacting nuclear protein NIP30, mRNA (cDNA clone MGC:88642 IMAGE:6305656), complete cds.BC063409 - Homo sapiens NEFA-interacting nuclear protein NIP30, mRNA (cDNA clone IMAGE:5211300), complete cds.JD424735 - Sequence 405759 from Patent EP1572962.JD354478 - Sequence 335502 from Patent EP1572962.JD156683 - Sequence 137707 from Patent EP1572962.JD301429 - Sequence 282453 from Patent EP1572962.JD450293 - Sequence 431317 from Patent EP1572962.JD547242 - Sequence 528266 from Patent EP1572962.JD144978 - Sequence 126002 from Patent EP1572962.JD501928 - Sequence 482952 from Patent EP1572962.BC020536 - Homo sapiens NEFA-interacting nuclear protein NIP30, mRNA (cDNA clone MGC:21022 IMAGE:3849620), complete cds.AL834421 - Homo sapiens mRNA; cDNA DKFZp667A136 (from clone DKFZp667A136).DQ891689 - Synthetic construct clone IMAGE:100004319; FLH180046.01X; RZPDo839F04132D NEFA-interacting nuclear protein NIP30 (NIP30) gene, encodes complete protein.KJ894770 - Synthetic construct Homo sapiens clone ccsbBroadEn_04164 FAM192A gene, encodes complete protein.DQ894983 - Synthetic construct Homo sapiens clone IMAGE:100009443; FLH180043.01L; RZPDo839F04131D NEFA-interacting nuclear protein NIP30 (NIP30) gene, encodes complete protein.AB528823 - Synthetic construct DNA, clone: pF1KE0417, Homo sapiens NIP30 gene for family with sequence similarity 192, member A, without stop codon, in Flexi system.AM393111 - Synthetic construct Homo sapiens clone IMAGE:100001874 for hypothetical protein (NIP30 gene).AM393361 - Synthetic construct Homo sapiens clone IMAGE:100001867 for hypothetical protein (NIP30 gene).KJ903265 - Synthetic construct Homo sapiens clone ccsbBroadEn_12659 FAM192A gene, encodes complete protein.
Other Names for This Gene
Alternate Gene Symbols: C16orf94 , CDA018, CDA10, ENST00000309137.1, ENST00000309137.10, ENST00000309137.11, ENST00000309137.12, ENST00000309137.2, ENST00000309137.3, ENST00000309137.4, ENST00000309137.5, ENST00000309137.6, ENST00000309137.7, ENST00000309137.8, ENST00000309137.9, FAM192A, NIP30 , NM_024946, PIP30 , PIP30_HUMAN, PSME3IP1 , Q9GZU8, uc317olr.1, uc317olr.2UCSC ID: ENST00000309137.13_7RefSeq Accession: NM_024946.4
Protein: Q9GZU8
(aka F192A_HUMAN)
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.