Human Gene FBRSL1 (ENST00000680143.1_4) from GENCODE V47lift37
  Description: fibrosin like 1, transcript variant 2 (from RefSeq NM_001367871.1)
Gencode Transcript: ENST00000680143.1_4
Gencode Gene: ENSG00000112787.14_14
Transcript (Including UTRs)
   Position: hg19 chr12:133,066,737-133,161,774 Size: 95,038 Total Exon Count: 19 Strand: +
Coding Region
   Position: hg19 chr12:133,067,157-133,160,364 Size: 93,208 Coding Exon Count: 19 

Page IndexSequence and LinksPrimersCTDGene AllelesMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:133,066,737-133,161,774)mRNA (may differ from genome)Protein (1002 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIPubMedUniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -244.90420-0.583 Picture PostScript Text
3' UTR -470.471410-0.334 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Descriptions from all associated GenBank mRNAs
  LF359318 - JP 2014500723-A/166821: Polycomb-Associated Non-Coding RNAs.
LF383997 - JP 2014500723-A/191500: Polycomb-Associated Non-Coding RNAs.
AB046765 - Homo sapiens mRNA for KIAA1545 protein, partial cds.
JD178398 - Sequence 159422 from Patent EP1572962.
JD399927 - Sequence 380951 from Patent EP1572962.
JD537805 - Sequence 518829 from Patent EP1572962.
JD078632 - Sequence 59656 from Patent EP1572962.
AF490258 - Homo sapiens XTP9 (XTP9) mRNA, complete cds.
JD085992 - Sequence 67016 from Patent EP1572962.
JD141624 - Sequence 122648 from Patent EP1572962.
JD396660 - Sequence 377684 from Patent EP1572962.
JD544123 - Sequence 525147 from Patent EP1572962.
JD478188 - Sequence 459212 from Patent EP1572962.
JD105467 - Sequence 86491 from Patent EP1572962.
JD332173 - Sequence 313197 from Patent EP1572962.
BC034807 - Homo sapiens cDNA clone IMAGE:4939084, partial cds.
JD252373 - Sequence 233397 from Patent EP1572962.
JD190208 - Sequence 171232 from Patent EP1572962.
JD261957 - Sequence 242981 from Patent EP1572962.
JD300418 - Sequence 281442 from Patent EP1572962.
JD403301 - Sequence 384325 from Patent EP1572962.
JD391764 - Sequence 372788 from Patent EP1572962.
JD522540 - Sequence 503564 from Patent EP1572962.
MA619574 - JP 2018138019-A/191500: Polycomb-Associated Non-Coding RNAs.
MA594895 - JP 2018138019-A/166821: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A7P0Z485, A0A7P0Z485_HUMAN, FBRSL1 , NM_001367871, uc330gns.1, uc330gns.2
UCSC ID: ENST00000680143.1_4
RefSeq Accession: NM_001367871.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.