Human Gene FBXL15 (ENST00000369956.8_5) from GENCODE V47lift37
  Description: F-box and leucine rich repeat protein 15, transcript variant 1 (from RefSeq NM_024326.4)
Gencode Transcript: ENST00000369956.8_5
Gencode Gene: ENSG00000107872.14_10
Transcript (Including UTRs)
   Position: hg19 chr10:104,180,593-104,182,893 Size: 2,301 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr10:104,180,887-104,182,750 Size: 1,864 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:104,180,593-104,182,893)mRNA (may differ from genome)Protein (300 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FXL15_HUMAN
DESCRIPTION: RecName: Full=F-box/LRR-repeat protein 15; AltName: Full=F-box only protein 37;
FUNCTION: Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of SMURF1, thereby acting as a positive regulator of the BMP signaling pathway. Required for dorsal/ventral pattern formation and bone mass maintenance. Also mediates ubiquitination of SMURF2 and WWP2.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Part of the SCF (SKP1-CUL1-F-box) E3 ubiquitin-protein ligase complex SCF(FBXL15) composed of CUL1, SKP1, RBX1 and FBXL15.
SUBCELLULAR LOCATION: Cytoplasm.
SIMILARITY: Belongs to the FBXL15 family.
SIMILARITY: Contains 1 F-box domain.
SIMILARITY: Contains 5 LRR (leucine-rich) repeats.
SEQUENCE CAUTION: Sequence=AAH02912.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAH36120.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAI12517.1; Type=Erroneous gene model prediction; Sequence=CAI12518.1; Type=Erroneous gene model prediction; Sequence=CAI12519.1; Type=Erroneous gene model prediction; Sequence=CAI12520.1; Type=Erroneous gene model prediction; Sequence=CAI12522.2; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 50.08 RPKM in Pituitary
Total median expression: 1082.86 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -111.30294-0.379 Picture PostScript Text
3' UTR -41.60143-0.291 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001810 - F-box_dom_cyclin-like

Pfam Domains:
PF00646 - F-box domain
PF13516 - Leucine Rich repeat

SCOP Domains:
81383 - F-box domain
51556 - Metallo-dependent hydrolases
52047 - RNI-like
52058 - L domain-like
52075 - Outer arm dynein light chain 1

ModBase Predicted Comparative 3D Structure on Q9H469
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0000209 protein polyubiquitination
GO:0009953 dorsal/ventral pattern formation
GO:0016567 protein ubiquitination
GO:0030282 bone mineralization
GO:0030513 positive regulation of BMP signaling pathway
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0043687 post-translational protein modification

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0019005 SCF ubiquitin ligase complex


-  Descriptions from all associated GenBank mRNAs
  AK122684 - Homo sapiens cDNA FLJ16137 fis, clone BRALZ2014316.
BC036120 - Homo sapiens F-box and leucine-rich repeat protein 15, mRNA (cDNA clone MGC:33979 IMAGE:5286464), complete cds.
BC130566 - Homo sapiens F-box and leucine-rich repeat protein 15, mRNA (cDNA clone MGC:163438 IMAGE:40146597), complete cds.
LF211356 - JP 2014500723-A/18859: Polycomb-Associated Non-Coding RNAs.
BC002912 - Homo sapiens F-box and leucine-rich repeat protein 15, mRNA (cDNA clone MGC:11279 IMAGE:3944940), complete cds.
JD236160 - Sequence 217184 from Patent EP1572962.
JD236161 - Sequence 217185 from Patent EP1572962.
KJ899530 - Synthetic construct Homo sapiens clone ccsbBroadEn_08924 FBXL15 gene, encodes complete protein.
KJ903162 - Synthetic construct Homo sapiens clone ccsbBroadEn_12556 FBXL15 gene, encodes complete protein.
LF345875 - JP 2014500723-A/153378: Polycomb-Associated Non-Coding RNAs.
JD451072 - Sequence 432096 from Patent EP1572962.
JD071726 - Sequence 52750 from Patent EP1572962.
JD497984 - Sequence 479008 from Patent EP1572962.
JD221545 - Sequence 202569 from Patent EP1572962.
MA581452 - JP 2018138019-A/153378: Polycomb-Associated Non-Coding RNAs.
MA446933 - JP 2018138019-A/18859: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9H469 (Reactome details) participates in the following event(s):

R-HSA-8952620 NEDD8:AcM-UBE2M binds CRL1 E3 ubiquitin ligase complex
R-HSA-8956200 MyrG-DCUN1D3 binds CRL1 E3 ubiquitin ligase complex
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-8955241 CAND1 binds cytosolic CRL E3 ubiquitin ligases
R-HSA-8952618 AcM-UBE2M transfers NEDD8 to CRL1 E3 ubiquitin ligase complex
R-HSA-8955289 COMMDs displace CAND1 from cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-8956040 COP9 signalosome deneddylates cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-8951664 Neddylation
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-597592 Post-translational protein modification
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-392499 Metabolism of proteins
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A1L4J8, B1AKX8, B1AKX9, B1AKY0, B1AKY1, C9JWA4, ENST00000369956.1, ENST00000369956.2, ENST00000369956.3, ENST00000369956.4, ENST00000369956.5, ENST00000369956.6, ENST00000369956.7, FBXO37, FXL15_HUMAN, NM_024326, Q0D2Q3, Q49AL7, Q5JWA5, Q9H469, uc318hze.1, uc318hze.2
UCSC ID: ENST00000369956.8_5
RefSeq Accession: NM_024326.4
Protein: Q9H469 (aka FXL15_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.