Human Gene FBXO3 (ENST00000265651.8_9) from GENCODE V47lift37
  Description: F-box protein 3, transcript variant 1 (from RefSeq NM_012175.4)
Gencode Transcript: ENST00000265651.8_9
Gencode Gene: ENSG00000110429.14_12
Transcript (Including UTRs)
   Position: hg19 chr11:33,762,490-33,796,066 Size: 33,577 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr11:33,763,454-33,796,043 Size: 32,590 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:33,762,490-33,796,066)mRNA (may differ from genome)Protein (471 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FBX3_HUMAN
DESCRIPTION: RecName: Full=F-box only protein 3;
FUNCTION: Substrate recognition component of the SCF (SKP1-CUL1-F- box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2 and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53- dependent transactivation.
SUBUNIT: Part of a SCF (SKP1-cullin-F-box) protein ligase complex consisting of FBXO3, SKP1, CUL1 and RBX1. Interacts with PML, interaction is direct and takes place either alone or within the SCF complex.
INTERACTION: P04608:tat (xeno); NbExp=3; IntAct=EBI-2509901, EBI-6164389;
SUBCELLULAR LOCATION: Nucleus. Note=Colocalizes with PML at the peripheries of nuclear bodies.
SIMILARITY: Contains 1 apaG domain.
SIMILARITY: Contains 1 F-box domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.92 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 257.39 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.9023-0.170 Picture PostScript Text
3' UTR -216.40964-0.224 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007474 - ApaG_domain
IPR018958 - Cell_wall_assmbl_KNR4-like
IPR001810 - F-box_dom_cyclin-like

Pfam Domains:
PF00646 - F-box domain
PF04379 - ApaG domain
PF09346 - SMI1 / KNR4 family (SUKH-1)
PF12937 - F-box-like

SCOP Domains:
48371 - ARM repeat
81383 - F-box domain
110069 - ApaG-like
160631 - SMI1/KNR4-like

ModBase Predicted Comparative 3D Structure on Q9UK99
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding

Biological Process:
GO:0006508 proteolysis
GO:0016567 protein ubiquitination

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  LF205803 - JP 2014500723-A/13306: Polycomb-Associated Non-Coding RNAs.
AB209039 - Homo sapiens mRNA for F-box only protein 3 isoform 1 variant protein.
BC046110 - Homo sapiens F-box protein 3, mRNA (cDNA clone MGC:57538 IMAGE:5549548), complete cds.
AK001943 - Homo sapiens cDNA FLJ11081 fis, clone PLACE1005187, weakly similar to APAG PROTEIN.
AL136625 - Homo sapiens mRNA; cDNA DKFZp564B092 (from clone DKFZp564B092).
BC039291 - Homo sapiens F-box protein 3, mRNA (cDNA clone IMAGE:5296662), complete cds.
AK123198 - Homo sapiens cDNA FLJ41204 fis, clone BRACE3000404.
JD503283 - Sequence 484307 from Patent EP1572962.
AL832826 - Homo sapiens mRNA; cDNA DKFZp667I1524 (from clone DKFZp667I1524).
AK300721 - Homo sapiens cDNA FLJ58692 complete cds, highly similar to F-box only protein 3.
JD534207 - Sequence 515231 from Patent EP1572962.
JD315899 - Sequence 296923 from Patent EP1572962.
LF348390 - JP 2014500723-A/155893: Polycomb-Associated Non-Coding RNAs.
AK316286 - Homo sapiens cDNA, FLJ79185 complete cds, highly similar to F-box only protein 3.
JD135352 - Sequence 116376 from Patent EP1572962.
LF348389 - JP 2014500723-A/155892: Polycomb-Associated Non-Coding RNAs.
JD467505 - Sequence 448529 from Patent EP1572962.
KJ893554 - Synthetic construct Homo sapiens clone ccsbBroadEn_02948 FBXO3 gene, encodes complete protein.
EU832324 - Synthetic construct Homo sapiens clone HAIB:100067353; DKFZo008E0827 F-box protein 3 protein (FBXO3) gene, encodes complete protein.
EU832409 - Synthetic construct Homo sapiens clone HAIB:100067438; DKFZo004E0828 F-box protein 3 protein (FBXO3) gene, encodes complete protein.
LF348388 - JP 2014500723-A/155891: Polycomb-Associated Non-Coding RNAs.
AK128454 - Homo sapiens cDNA FLJ46597 fis, clone THYMU3046360, highly similar to F-box only protein 3.
AF176702 - Homo sapiens F-box protein FBX3 mRNA, partial cds.
LF348381 - JP 2014500723-A/155884: Polycomb-Associated Non-Coding RNAs.
AK304866 - Homo sapiens cDNA FLJ59154 complete cds, highly similar to F-box only protein 3.
LF348380 - JP 2014500723-A/155883: Polycomb-Associated Non-Coding RNAs.
LF348379 - JP 2014500723-A/155882: Polycomb-Associated Non-Coding RNAs.
CU692298 - Synthetic construct Homo sapiens gateway clone IMAGE:100021494 5' read FBXO3 mRNA.
LF348378 - JP 2014500723-A/155881: Polycomb-Associated Non-Coding RNAs.
AF174595 - Homo sapiens F-box protein Fbx3 (FBX3) mRNA, partial cds.
LF348377 - JP 2014500723-A/155880: Polycomb-Associated Non-Coding RNAs.
LF212906 - JP 2014500723-A/20409: Polycomb-Associated Non-Coding RNAs.
MA583967 - JP 2018138019-A/155893: Polycomb-Associated Non-Coding RNAs.
MA583966 - JP 2018138019-A/155892: Polycomb-Associated Non-Coding RNAs.
MA583965 - JP 2018138019-A/155891: Polycomb-Associated Non-Coding RNAs.
MA583958 - JP 2018138019-A/155884: Polycomb-Associated Non-Coding RNAs.
MA583957 - JP 2018138019-A/155883: Polycomb-Associated Non-Coding RNAs.
MA583956 - JP 2018138019-A/155882: Polycomb-Associated Non-Coding RNAs.
MA583955 - JP 2018138019-A/155881: Polycomb-Associated Non-Coding RNAs.
MA583954 - JP 2018138019-A/155880: Polycomb-Associated Non-Coding RNAs.
MA441380 - JP 2018138019-A/13306: Polycomb-Associated Non-Coding RNAs.
MA448483 - JP 2018138019-A/20409: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: B3KY16, D3DR05, ENST00000265651.1, ENST00000265651.2, ENST00000265651.3, ENST00000265651.4, ENST00000265651.5, ENST00000265651.6, ENST00000265651.7, FBX3, FBX3_HUMAN, NM_012175, Q86X90, Q9H0V2, Q9NUX2, Q9UK99, uc317idc.1, uc317idc.2
UCSC ID: ENST00000265651.8_9
RefSeq Accession: NM_012175.4
Protein: Q9UK99 (aka FBX3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.