Human Gene FCGR1A (ENST00000369168.5_4) from GENCODE V47lift37
  Description: Fc gamma receptor Ia, transcript variant 12 (from RefSeq NR_166123.1)
Gencode Transcript: ENST00000369168.5_4
Gencode Gene: ENSG00000150337.14_9
Transcript (Including UTRs)
   Position: hg19 chr1:149,754,250-149,763,231 Size: 8,982 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr1:149,754,300-149,763,073 Size: 8,774 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:149,754,250-149,763,231)mRNA (may differ from genome)Protein (374 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FCGR1_HUMAN
DESCRIPTION: RecName: Full=High affinity immunoglobulin gamma Fc receptor I; Short=IgG Fc receptor I; AltName: Full=Fc-gamma RI; Short=FcRI; AltName: Full=Fc-gamma RIA; Short=FcgammaRIa; AltName: CD_antigen=CD64; Flags: Precursor;
FUNCTION: High affinity receptor for the Fc region of immunoglobulins gamma. Functions in both innate and adaptive immune responses.
SUBUNIT: Interacts with FCERG1; forms a functional signaling complex. Interacts with FLNA; prevents FCGR1A degradation. Interacts with EPB41L2, LAT and PPL. Interacts with HCK and LYN.
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein. Note=Stabilized at the cell membrane through interaction with FCER1G.
TISSUE SPECIFICITY: Monocyte/macrophage specific.
PTM: Phosphorylated on serine residues (By similarity).
SIMILARITY: Belongs to the immunoglobulin superfamily. FCGR1 family.
SIMILARITY: Contains 3 Ig-like C2-type (immunoglobulin-like) domains.
WEB RESOURCE: Name=FCGR1Abase; Note=FCGR1A mutation db; URL="http://bioinf.uta.fi/FCGR1Abase/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FCGR1A
Diseases sorted by gene-association score: cervical adenitis (15), tetrasomy 21 (13), pharyngitis (11), cerebral neuroblastoma (7), gnathomiasis (7), specific bursitis often of occupational origin (7), olecranon bursitis (6), shwartzman phenomenon (6), dengue disease (5), systemic lupus erythematosus (3), leukemia, acute myeloid (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.04 RPKM in Whole Blood
Total median expression: 59.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.5050-0.090 Picture PostScript Text
3' UTR -34.90158-0.221 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR003599 - Ig_sub
IPR003598 - Ig_sub2
IPR013151 - Immunoglobulin

Pfam Domains:
PF00047 - Immunoglobulin domain
PF13895 - Immunoglobulin domain
PF13927 - Immunoglobulin domain

SCOP Domains:
48726 - Immunoglobulin
49265 - Fibronectin type III
55271 - DNA repair protein MutS, domain I

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3RJD - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P12314
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005057 signal transducer activity, downstream of receptor
GO:0005515 protein binding
GO:0019864 IgG binding

Biological Process:
GO:0002376 immune system process
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0006898 receptor-mediated endocytosis
GO:0006911 phagocytosis, engulfment
GO:0006955 immune response
GO:0007165 signal transduction
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0045087 innate immune response
GO:0050776 regulation of immune response
GO:0060333 interferon-gamma-mediated signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030669 clathrin-coated endocytic vesicle membrane
GO:0031901 early endosome membrane


-  Descriptions from all associated GenBank mRNAs
  X14355 - Human mRNA for high affinity Fc receptor (FcRI) 'b form'.
AK291502 - Homo sapiens cDNA FLJ77773 complete cds, highly similar to Homo sapiens Fc fragment of IgG, high affinity Ia, receptor (CD64) (FCGR1A), mRNA.
DQ786309 - Homo sapiens clone HLS_IMAGE_795343 mRNA sequence.
LP895722 - Sequence 586 from Patent EP3253886.
AK311303 - Homo sapiens cDNA, FLJ18345.
X14356 - Human mRNA for high affinity Fc receptor (FcRI).
AK291451 - Homo sapiens cDNA FLJ75382 complete cds, highly similar to Homo sapiens Fc fragment of IgG, high affinity Ia, receptor (CD64) (FCGR1A), mRNA.
JD432124 - Sequence 413148 from Patent EP1572962.
BC032634 - Homo sapiens Fc fragment of IgG, high affinity Ia, receptor (CD64), mRNA (cDNA clone MGC:45021 IMAGE:5248549), complete cds.
CU689454 - Synthetic construct Homo sapiens gateway clone IMAGE:100019133 5' read FCGR1A mRNA.
AB527585 - Synthetic construct DNA, clone: pF1KB6561, Homo sapiens FCGR1A gene for Fc fragment of IgG, high affinity Ia, receptor, without stop codon, in Flexi system.
DQ893997 - Synthetic construct Homo sapiens clone IMAGE:100008457; FLH166386.01L; RZPDo839G0485D Fc fragment of IgG, high affinity Ia, receptor (CD64) (FCGR1A) gene, encodes complete protein.
KJ896803 - Synthetic construct Homo sapiens clone ccsbBroadEn_06197 FCGR1A gene, encodes complete protein.
BC152383 - Homo sapiens Fc fragment of IgG, high affinity Ia, receptor (CD64), mRNA (cDNA clone MGC:166938 IMAGE:100013442), complete cds.
DQ890842 - Synthetic construct clone IMAGE:100003472; FLH166390.01X; RZPDo839G0486D Fc fragment of IgG, high affinity Ia, receptor (CD64) (FCGR1A) gene, encodes complete protein.
L03418 - Human Fc-gamma receptor I A1 mRNA, complete cds.
JD423299 - Sequence 404323 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P12314 (Reactome details) participates in the following event(s):

R-HSA-2029455 Cross-linking of FCGRIA with IgG-coated Ag
R-HSA-5685602 NCR3LG1 binds NCR3
R-HSA-6793275 CMVPP65 binds NCR3
R-HSA-5685600 viral HA binds NCRI
R-HSA-1236939 Interaction of exogenous soluble antigen with its corresponding receptor
R-HSA-1236940 Exogenous soluble antigen targeted to more stable early endosome
R-HSA-2029452 Recruitment of SYK to phosphorylated ITAMs
R-HSA-1236941 Internalization of receptor bound antigen into clathrin coted vesicles
R-HSA-1236955 Movement of clathrin coated vesicles into early endosome
R-HSA-2029449 Phosphorylation of SYK by Src kinases
R-HSA-2029270 Recruitment of PLCgamma to membrane
R-HSA-2029273 PI3K binds to p-6Y-SYK
R-HSA-2029458 Recruitment of VAV1 to p-6Y-SYK
R-HSA-2197697 Recruitment of CRKII:DOCK180:ELMO complex to FCGR
R-HSA-2029272 Release of PLCG from FCGR
R-HSA-2029453 Phosphorylation of VAV
R-HSA-2029268 Phosphorylation and activation of PLCG
R-HSA-2029467 Activation of RAC1 by CRKII:DOCK180:ELMO
R-HSA-2029451 Activation of RAC1 by VAV
R-HSA-2029271 PI3K phosphorylates PIP2 to PIP3
R-HSA-2029481 FCGR activation
R-HSA-877300 Interferon gamma signaling
R-HSA-2029480 Fcgamma receptor (FCGR) dependent phagocytosis
R-HSA-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
R-HSA-1236978 Cross-presentation of soluble exogenous antigens (endosomes)
R-HSA-913531 Interferon Signaling
R-HSA-168249 Innate Immune System
R-HSA-2029482 Regulation of actin dynamics for phagocytic cup formation
R-HSA-1280218 Adaptive Immune System
R-HSA-1236975 Antigen processing-Cross presentation
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System
R-HSA-2029485 Role of phospholipids in phagocytosis
R-HSA-983169 Class I MHC mediated antigen processing & presentation

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000369168.1, ENST00000369168.2, ENST00000369168.3, ENST00000369168.4, FCG1, FCGR1, FCGR1_HUMAN, IGFR1, NR_166123, P12314, P12315, Q5QNW7, Q92495, Q92663, uc318hju.1, uc318hju.2
UCSC ID: ENST00000369168.5_4
RefSeq Accession: NM_000566.4
Protein: P12314 (aka FCGR1_HUMAN or FCG1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.