Human Gene FCGR2B (ENST00000358671.10_7) from GENCODE V47lift37
  Description: Fc gamma receptor IIb, transcript variant 13 (from RefSeq NR_169827.1)
Gencode Transcript: ENST00000358671.10_7
Gencode Gene: ENSG00000072694.22_12
Transcript (Including UTRs)
   Position: hg19 chr1:161,632,933-161,648,444 Size: 15,512 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr1:161,633,032-161,647,343 Size: 14,312 Coding Exon Count: 8 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:161,632,933-161,648,444)mRNA (may differ from genome)Protein (310 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsHGNC
MalacardsMGIPubMedReactomeUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: FCG2B_HUMAN
DESCRIPTION: RecName: Full=Low affinity immunoglobulin gamma Fc region receptor II-b; Short=IgG Fc receptor II-b; AltName: Full=CDw32; AltName: Full=Fc-gamma RII-b; Short=Fc-gamma-RIIb; Short=FcRII-b; AltName: CD_antigen=CD32; Flags: Precursor;
FUNCTION: Receptor for the Fc region of complexed or aggregated immunoglobulins gamma. Low affinity receptor. Involved in a variety of effector and regulatory functions such as phagocytosis of immune complexes and modulation of antibody production by B- cells. Binding to this receptor results in down-modulation of previous state of cell activation triggered via antigen receptors on B-cells (BCR), T-cells (TCR) or via another Fc receptor. Isoform IIB1 fails to mediate endocytosis or phagocytosis. Isoform IIB2 does not trigger phagocytosis.
SUBUNIT: Isoform IIB1 interacts with measles virus N protein. N protein is released in the blood following lysis of measles infected cells. This interaction presumably block inflammatory immune response. Interacts with INPP5D/SHIP1. Interacts with FGR. Interacts with LYN.
INTERACTION: P01857:IGHG1; NbExp=31; IntAct=EBI-724784, EBI-356114; P16333:NCK1; NbExp=2; IntAct=EBI-724784, EBI-389883; P19174:PLCG1; NbExp=2; IntAct=EBI-724784, EBI-79387;
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Is the most broadly distributed Fc-gamma- receptor. Expressed in monocyte, neutrophils, macrophages, basophils, eosinophils, Langerhans cells, B-cells, platelets cells and placenta (endothelial cells). Not detected in natural killer cells.
DOMAIN: Contains 1 copy of a cytoplasmic motif that is referred to as the immunoreceptor tyrosine-based inhibitor motif (ITIM). This motif is involved in modulation of cellular responses. The phosphorylated ITIM motif can bind the SH2 domain of several SH2- containing phosphatases.
PTM: Phosphorylated by SRC-type Tyr-kinases such as LYN, BLK, FYN and SYK.
POLYMORPHISM: Note=FCGR2B polymorphisms can influence susceptibility or resistance to malaria [MIM:611162].
DISEASE: Note=A chromosomal aberration involving FCGR2B is found in a follicular lymphoma. Translocation t(1;22)(q22;q11). The translocation leads to the hyperexpression of the receptor. This may play a role in the tumor progression.
DISEASE: Defects in FCGR2B are a cause of susceptibility to systemic lupus erythematosus (SLE) [MIM:152700]. A chronic, relapsing, inflammatory, and often febrile multisystemic disorder of connective tissue, characterized principally by involvement of the skin, joints, kidneys and serosal membranes. It is of unknown etiology, but is thought to represent a failure of the regulatory mechanisms of the autoimmune system. The disease is marked by a wide range of system dysfunctions, an elevated erythrocyte sedimentation rate, and the formation of LE cells in the blood or bone marrow.
SIMILARITY: Contains 2 Ig-like C2-type (immunoglobulin-like) domains.
CAUTION: Has sometimes been attributed to correspond to FcR-IIC.
SEQUENCE CAUTION: Sequence=CAA35645.1; Type=Erroneous initiation;
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/FCGR2BID397.html";

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FCGR2B
Diseases sorted by gene-association score: systemic lupus erythematosus* (305), malaria* (147), lupus erythematosus (13), measles (13), cryptococcal meningitis (10), demyelinating polyneuropathy (9), multifocal motor neuropathy (8), chronic polyneuropathy (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.62 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 122.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.5099-0.318 Picture PostScript Text
3' UTR -285.401101-0.259 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR003599 - Ig_sub

Pfam Domains:
PF00047 - Immunoglobulin domain
PF13895 - Immunoglobulin domain
PF13927 - Immunoglobulin domain

SCOP Domains:
48726 - Immunoglobulin

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2FCB - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P31994
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001540 beta-amyloid binding
GO:0005515 protein binding
GO:0019772 low-affinity IgG receptor activity
GO:0019864 IgG binding
GO:0044877 macromolecular complex binding

Biological Process:
GO:0001811 negative regulation of type I hypersensitivity
GO:0001814 negative regulation of antibody-dependent cellular cytotoxicity
GO:0002266 follicular dendritic cell activation
GO:0002313 mature B cell differentiation involved in immune response
GO:0002316 follicular B cell differentiation
GO:0002436 immune complex clearance by monocytes and macrophages
GO:0002605 negative regulation of dendritic cell antigen processing and presentation
GO:0002622 regulation of B cell antigen processing and presentation
GO:0002638 negative regulation of immunoglobulin production
GO:0002819 regulation of adaptive immune response
GO:0002865 negative regulation of acute inflammatory response to antigenic stimulus
GO:0002922 positive regulation of humoral immune response
GO:0002924 negative regulation of humoral immune response mediated by circulating immunoglobulin
GO:0006898 receptor-mediated endocytosis
GO:0006911 phagocytosis, engulfment
GO:0006952 defense response
GO:0006954 inflammatory response
GO:0006955 immune response
GO:0007165 signal transduction
GO:0009617 response to bacterium
GO:0010469 regulation of receptor activity
GO:0016032 viral process
GO:0016064 immunoglobulin mediated immune response
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0021549 cerebellum development
GO:0030889 negative regulation of B cell proliferation
GO:0032693 negative regulation of interleukin-10 production
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0043031 negative regulation of macrophage activation
GO:0043318 negative regulation of cytotoxic T cell degranulation
GO:0045088 regulation of innate immune response
GO:0046330 positive regulation of JNK cascade
GO:0050710 negative regulation of cytokine secretion
GO:0050765 negative regulation of phagocytosis
GO:0050766 positive regulation of phagocytosis
GO:0050776 regulation of immune response
GO:0050777 negative regulation of immune response
GO:0050869 negative regulation of B cell activation
GO:0071219 cellular response to molecule of bacterial origin
GO:0090264 regulation of immune complex clearance by monocytes and macrophages
GO:1901216 positive regulation of neuron death
GO:1902564 negative regulation of neutrophil activation
GO:1902950 regulation of dendritic spine maintenance
GO:1904646 cellular response to beta-amyloid
GO:2001199 negative regulation of dendritic cell differentiation
GO:0045576 mast cell activation

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009897 external side of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043197 dendritic spine
GO:0044297 cell body


-  Descriptions from all associated GenBank mRNAs
  M31933 - Human IgG low affinity Fc fragment receptor (FcRIIb3) mRNA, complete cds.
AF543826 - Homo sapiens IgG receptor IIB (FCGR2B) mRNA, complete cds.
X17653 - H.sapiens hFcRII-C isoform mRNA for IgG Fc receptor hFcRII.
JD405038 - Sequence 386062 from Patent EP1572962.
AK308150 - Homo sapiens cDNA, FLJ98098.
AB209585 - Homo sapiens mRNA for Fc fragment of IgG, low affinity IIb, receptor for (CD32) isoform 1 variant protein.
BC062629 - Homo sapiens cDNA clone IMAGE:5227673, **** WARNING: chimeric clone ****.
X52473 - Human mRNA for beta-Fc-gamma receptor II.
X62573 - H.sapiens RNA for Fc receptor, TC9.
BC146678 - Homo sapiens Fc fragment of IgG, low affinity IIb, receptor (CD32), mRNA (cDNA clone MGC:165089 IMAGE:40148906), complete cds.
M28696 - Human low-affinity IgG Fc receptor (beta-Fc-gamma-RII) mRNA, complete cds.
M31934 - Human IgG low affinity Fc fragment receptor (FcRIIb2) mRNA, complete cds.
BC031992 - Homo sapiens Fc fragment of IgG, low affinity IIb, receptor (CD32), mRNA (cDNA clone MGC:21364 IMAGE:4752609), complete cds.
BC141826 - Homo sapiens Fc fragment of IgG, low affinity IIb, receptor (CD32), mRNA (cDNA clone MGC:164959 IMAGE:40148276), complete cds.
JD478135 - Sequence 459159 from Patent EP1572962.
JD149684 - Sequence 130708 from Patent EP1572962.
AB590317 - Synthetic construct DNA, clone: pFN21AE1428, Homo sapiens FCGR2B gene for Fc fragment of IgG, low affinity IIb, receptor, without stop codon, in Flexi system.
CR407635 - Homo sapiens full open reading frame cDNA clone RZPDo834F022D for gene FCGR2B, Fc fragment of IgG, low affinity IIb, receptor for (CD32) complete cds, without stopcodon.
U87560 - Human Fc-gamma-RIIb1 (Fc-gamma-RIIB) mRNA, partial cds.
U87561 - Human Fc-gamma-RIIb1 (Fc-gamma-RIIB) mRNA, partial cds.
U87562 - Human Fc-gamma-RIIb1 (Fc-gamma-RIIB) mRNA, partial cds.
U87563 - Human Fc-gamma-RIIb1 (Fc-gamma-RIIB) mRNA, partial cds.
U87564 - Human Fc-gamma-RIIb2 (Fc-gamma-RIIB) mRNA, partial cds.
U87565 - Human Fc-gamma-RIIb2 (Fc-gamma-RIIB) mRNA, partial cds.
U87566 - Human Fc-gamma-RIIb2 (Fc-gamma-RIIB) mRNA, partial cds.
U87567 - Human Fc-gamma-RIIb2 (Fc-gamma-RIIB) mRNA, partial cds.
U87568 - Human Fc-gamma-RIIb2 (Fc-gamma-RIIB) mRNA, partial cds.
U87569 - Human Fc-gamma-RIIb2 (Fc-gamma-RIIB) mRNA, partial cds.
U87570 - Human Fc-gamma-RIIb1 (Fc-gamma-RIIB) mRNA, partial cds.
U87571 - Human Fc-gamma-RIIb2 (Fc-gamma-RIIB) mRNA, partial cds.
U87572 - Human Fc-gamma-RIIb1 (Fc-gamma-RIIB) mRNA, partial cds.
U87573 - Human Fc-gamma-RIIb1 (Fc-gamma-RIIB) mRNA, partial cds.
U87574 - Human Fc-gamma-RIIb2 (Fc-gamma-RIIB) mRNA, partial cds.
U87575 - Human Fc-gamma-RIIb2 (Fc-gamma-RIIB) mRNA, partial cds.
U87576 - Human Fc-gamma-RIIb1 (Fc-gamma-RIIB) mRNA, partial cds.
U87577 - Human Fc-gamma-RIIb1 (Fc-gamma-RIIB) mRNA, partial cds.
CU689254 - Synthetic construct Homo sapiens gateway clone IMAGE:100018829 5' read FCGR2B mRNA.
DQ894525 - Synthetic construct Homo sapiens clone IMAGE:100008985; FLH171251.01L; RZPDo839G0499D Fc fragment of IgG, low affinity IIc, receptor for (CD32) (FCGR2C) gene, encodes complete protein.
KJ891152 - Synthetic construct Homo sapiens clone ccsbBroadEn_00546 FCGR2B gene, encodes complete protein.
KR710627 - Synthetic construct Homo sapiens clone CCSBHm_00014872 FCGR2B (FCGR2B) mRNA, encodes complete protein.
BC148273 - Homo sapiens Fc fragment of IgG, low affinity IIb, receptor (CD32), mRNA (cDNA clone MGC:166965 IMAGE:8860219), complete cds.
DQ891344 - Synthetic construct clone IMAGE:100003974; FLH171255.01X; RZPDo839G04100D Fc fragment of IgG, low affinity IIc, receptor for (CD32) (FCGR2C) gene, encodes complete protein.
M31935 - Human IgG low affinity Fc fragment receptor (FcRIIb1) mRNA, 3' end.
AB051387 - Homo sapiens FCGR2B mRNA for Fc gamma receptor IIB, partial cds.
AB050934 - Homo sapiens FCGR2B mRNA for Fc gamma receptor IIB, partial cds.
JD208043 - Sequence 189067 from Patent EP1572962.
JD358779 - Sequence 339803 from Patent EP1572962.
JD062123 - Sequence 43147 from Patent EP1572962.
JD490267 - Sequence 471291 from Patent EP1572962.
JD547452 - Sequence 528476 from Patent EP1572962.
JD511952 - Sequence 492976 from Patent EP1572962.
JD306850 - Sequence 287874 from Patent EP1572962.
JD296573 - Sequence 277597 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_blymphocytePathway - B Lymphocyte Cell Surface Molecules

Reactome (by CSHL, EBI, and GO)

Protein P31994 (Reactome details) participates in the following event(s):

R-HSA-199161 Fc gamma receptors interact with antigen-bound IgG
R-HSA-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A6H8N3, CD32, ENST00000358671.1, ENST00000358671.2, ENST00000358671.3, ENST00000358671.4, ENST00000358671.5, ENST00000358671.6, ENST00000358671.7, ENST00000358671.8, ENST00000358671.9, FCG2, FCG2B_HUMAN, IGFR2, NR_169827, O95649, P31994, Q53X85, Q5VXA9, Q8NIA1, uc318arf.1, uc318arf.2
UCSC ID: ENST00000358671.10_7
RefSeq Accession: NM_001394477.1
Protein: P31994 (aka FCG2B_HUMAN or FCGB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.