Human Gene FFAR4 (ENST00000371481.9_5) from GENCODE V47lift37
  Description: free fatty acid receptor 4, transcript variant 2 (from RefSeq NM_001195755.2)
Gencode Transcript: ENST00000371481.9_5
Gencode Gene: ENSG00000186188.11_6
Transcript (Including UTRs)
   Position: hg19 chr10:95,326,422-95,349,829 Size: 23,408 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr10:95,326,478-95,347,366 Size: 20,889 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:95,326,422-95,349,829)mRNA (may differ from genome)Protein (361 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: O3FA1_HUMAN
DESCRIPTION: RecName: Full=Omega-3 fatty acid receptor 1; AltName: Full=G-protein coupled receptor 120; AltName: Full=G-protein coupled receptor 129; AltName: Full=G-protein coupled receptor GT01; AltName: Full=G-protein coupled receptor PGR4;
FUNCTION: Receptor for medium and long-chain free fatty acid (FAA). Signals via a G(q)/G(11)-coupled pathway. Acts as a receptor for omega-3 fatty acids and mediates robust anti- inflammatory effects particularly in macrophages and fat cells. The anti-inflammatory effects involve inhibition of TAK1 through a beta-arrestin 2 (ARRB2)/TAB1 dependent effect but independent of G(q)/G(11)-coupled pathway. Mediates potent insulin sensitizing and antidiabetic effects by repressing macrophage-induced tissue inflammation. May mediate the taste of fatty acids (By similarity).
SUBUNIT: Interacts with ARRB2 following docosahexaenoic acid (DHA) stimulation (By similarity).
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (By similarity). Note=Colocalized with ARRB2 following DHA treatment (By similarity).
TISSUE SPECIFICITY: Abundant expression in the intestinal tract.
PTM: Phosphorylated. FFA stimulation facilitates phosphorylation.
POLYMORPHISM: Genetic variations in O3FAR1 define the body mass index quantitative trait locus 10 (BMIQ10) [MIM:607514]. Variance in body mass index is a susceptibility factor for obesity.
MISCELLANEOUS: It has been shown that FFA alpha-linolenic acid stimulate secretion of glucagon-like peptide 1 (GLP-1) from the gastro-intestinal tract (PubMed:15619630). However, this ligand is an agonist of both GPR120 and FFA1 and the latter has been shown to mediate GLP-1 release too (PubMed:18519800). So the precise role of GPR120 in mediating needs to be confirmed.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FFAR4
Diseases sorted by gene-association score: obesity* (173)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.39 RPKM in Pituitary
Total median expression: 22.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -13.8056-0.246 Picture PostScript Text
3' UTR -842.802463-0.342 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on Q5NUL3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0005504 fatty acid binding
GO:0008289 lipid binding
GO:0008527 taste receptor activity
GO:0042277 peptide binding

Biological Process:
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0010827 regulation of glucose transport
GO:0043066 negative regulation of apoptotic process
GO:0045444 fat cell differentiation
GO:0046879 hormone secretion
GO:0050710 negative regulation of cytokine secretion
GO:0050728 negative regulation of inflammatory response
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0032870 cellular response to hormone stimulus
GO:1901652 response to peptide

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030139 endocytic vesicle


-  Descriptions from all associated GenBank mRNAs
  KJ896045 - Synthetic construct Homo sapiens clone ccsbBroadEn_05439 O3FAR1 gene, encodes complete protein.
BX647721 - Homo sapiens mRNA; cDNA DKFZp686F0824 (from clone DKFZp686F0824).
AK301525 - Homo sapiens cDNA FLJ52634 complete cds, highly similar to G-protein coupled receptor 120.
AB115768 - Homo sapiens mRNA for G-protein-coupled receptor GT01, complete cds.
AY288417 - Homo sapiens G protein-coupled receptor 120 (GPR120) mRNA, complete cds.
BC101175 - Homo sapiens G protein-coupled receptor 120, mRNA (cDNA clone MGC:119984 IMAGE:40016354), complete cds.
AY255573 - Homo sapiens G protein-coupled receptor PGR4 mRNA, partial cds.
JD384620 - Sequence 365644 from Patent EP1572962.
JD146359 - Sequence 127383 from Patent EP1572962.
JD221849 - Sequence 202873 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q5NUL3 (Reactome details) participates in the following event(s):

R-HSA-444191 GPR120 is a receptor for unsaturated long-chain free fatty acids
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-444209 Free fatty acid receptors
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000371481.1, ENST00000371481.2, ENST00000371481.3, ENST00000371481.4, ENST00000371481.5, ENST00000371481.6, ENST00000371481.7, ENST00000371481.8, FFAR4 , FFAR4_HUMAN, GPR120 , GPR129, NM_001195755, O3FAR1, PGR4, Q495H1, Q5NUL3, Q5VY25, Q5VY26, Q7Z605, Q86SM7, uc318jei.1, uc318jei.2
UCSC ID: ENST00000371481.9_5
RefSeq Accession: NM_001195755.2
Protein: Q5NUL3 (aka O3FA1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.