Human Gene FGFR4 (ENST00000292408.9_7) from GENCODE V47lift37
  Description: fibroblast growth factor receptor 4, transcript variant 3 (from RefSeq NM_213647.3)
Gencode Transcript: ENST00000292408.9_7
Gencode Gene: ENSG00000160867.15_15
Transcript (Including UTRs)
   Position: hg19 chr5:176,513,916-176,525,145 Size: 11,230 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr5:176,516,604-176,524,677 Size: 8,074 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:176,513,916-176,525,145)mRNA (may differ from genome)Protein (802 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FGFR4_HUMAN
DESCRIPTION: RecName: Full=Fibroblast growth factor receptor 4; Short=FGFR-4; EC=2.7.10.1; AltName: CD_antigen=CD334; Flags: Precursor;
FUNCTION: Tyrosine-protein kinase that acts as cell-surface receptor for fibroblast growth factors and plays a role in the regulation of cell proliferation, differentiation and migration, and in regulation of lipid metabolism, bile acid biosynthesis, glucose uptake, vitamin D metabolism and phosphate homeostasis. Required for normal down-regulation of the expression of CYP7A1, the rate-limiting enzyme in bile acid synthesis, in response to FGF19. Phosphorylates PLCG1 and FRS2. Ligand binding leads to the activation of several signaling cascades. Activation of PLCG1 leads to the production of the cellular signaling molecules diacylglycerol and inositol 1,4,5-trisphosphate. Phosphorylation of FRS2 triggers recruitment of GRB2, GAB1, PIK3R1 and SOS1, and mediates activation of RAS, MAPK1/ERK2, MAPK3/ERK1 and the MAP kinase signaling pathway, as well as of the AKT1 signaling pathway. Promotes SRC-dependent phosphorylation of the matrix protease MMP14 and its lysosomal degradation. FGFR4 signaling is down-regulated by receptor internalization and degradation; MMP14 promotes internalization and degradation of FGFR4. Mutations that lead to constitutive kinase activation or impair normal FGFR4 inactivation lead to aberrant signaling.
CATALYTIC ACTIVITY: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.
ENZYME REGULATION: Present in an inactive conformation in the absence of bound ligand. Ligand binding leads to dimerization and activation by autophosphorylation on tyrosine residues.
SUBUNIT: Monomer. Homodimer after ligand binding. Interacts with FGF1, FGF2, FGF4, FGF6, FGF8, FGF9, FGF16, FGF17, FGF18, FGF19, FGF21 and FGF23 (in vitro). Binding affinity for FGF family members is enhanced by interactions between FGFs and heparan sulfate proteoglycans. Interacts with KLB; this strongly increases the affinity for FGF19 and FGF23. Affinity for FGF19 is strongly increased by KLB and sulfated glycosaminoglycans. KLB and KL both interact with the core-glycosylated FGFR4 in the endoplasmic reticulum and promote its degradation, so that only FGFR4 with fully mature N-glycans is expressed at the cell surface. Identified in a complex with NCAM1, CDH2, PLCG1, FRS2, SRC, SHC1, GAP43 and CTTN. Interacts with MMP14 and HIP1.
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein. Endosome. Endoplasmic reticulum. Note=Internalized from the cell mebrane to recycling endosomes, and from there back to the cell membrane.
SUBCELLULAR LOCATION: Isoform 2: Secreted.
TISSUE SPECIFICITY: Expressed in gastrointestinal epithelial cells, pancreas, and gastric and pancreatic cancer cell lines.
PTM: N-glycosylated. Full maturation of the glycan chains in the Golgi is essential for high affinity interaction with FGF19.
PTM: Ubiquitinated. Subject to proteasomal degradation when not fully glycosylated.
PTM: Autophosphorylated. Binding of FGF family members together with heparan sulfate proteoglycan or heparin promotes receptor dimerization and autophosphorylation on tyrosine residues. Autophosphorylation occurs in trans between the two FGFR molecules present in the dimer.
SIMILARITY: Belongs to the protein kinase superfamily. Tyr protein kinase family. Fibroblast growth factor receptor subfamily.
SIMILARITY: Contains 3 Ig-like C2-type (immunoglobulin-like) domains.
SIMILARITY: Contains 1 protein kinase domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/fgfr4/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FGFR4
Diseases sorted by gene-association score: prostate cancer* (87), neuroma (5), adenocarcinoma (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 38.73 RPKM in Lung
Total median expression: 217.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -101.60216-0.470 Picture PostScript Text
3' UTR -193.30468-0.413 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR013098 - Ig_I-set
IPR003598 - Ig_sub2
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR001245 - Ser-Thr/Tyr_kinase_cat_dom
IPR008266 - Tyr_kinase_AS
IPR020635 - Tyr_kinase_cat_dom
IPR016248 - Tyr_kinase_fibroblast_GF_rcpt

Pfam Domains:
PF00047 - Immunoglobulin domain
PF00069 - Protein kinase domain
PF07679 - Immunoglobulin I-set domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF13895 - Immunoglobulin domain
PF13927 - Immunoglobulin domain

SCOP Domains:
48726 - Immunoglobulin
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1QCT - Model


ModBase Predicted Comparative 3D Structure on P22455
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0004714 transmembrane receptor protein tyrosine kinase activity
GO:0005007 fibroblast growth factor-activated receptor activity
GO:0005088 Ras guanyl-nucleotide exchange factor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008201 heparin binding
GO:0016301 kinase activity
GO:0016303 1-phosphatidylinositol-3-kinase activity
GO:0016740 transferase activity
GO:0017134 fibroblast growth factor binding
GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity

Biological Process:
GO:0000165 MAPK cascade
GO:0006468 protein phosphorylation
GO:0008284 positive regulation of cell proliferation
GO:0008543 fibroblast growth factor receptor signaling pathway
GO:0010628 positive regulation of gene expression
GO:0010715 regulation of extracellular matrix disassembly
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0019216 regulation of lipid metabolic process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process
GO:0042593 glucose homeostasis
GO:0042632 cholesterol homeostasis
GO:0043085 positive regulation of catalytic activity
GO:0045862 positive regulation of proteolysis
GO:0046777 protein autophosphorylation
GO:0046854 phosphatidylinositol phosphorylation
GO:0051897 positive regulation of protein kinase B signaling
GO:0055062 phosphate ion homeostasis
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0070857 regulation of bile acid biosynthetic process
GO:2000573 positive regulation of DNA biosynthetic process
GO:1903412 response to bile acid

Cellular Component:
GO:0005576 extracellular region
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005783 endoplasmic reticulum
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030133 transport vesicle
GO:0005911 cell-cell junction


-  Descriptions from all associated GenBank mRNAs
  BC011847 - Homo sapiens fibroblast growth factor receptor 4, mRNA (cDNA clone MGC:20292 IMAGE:4121396), complete cds.
AK301169 - Homo sapiens cDNA FLJ60908 complete cds, highly similar to Homo sapiens fibroblast growth factor receptor 4 (FGFR4), transcript variant 2, mRNA.
AK225280 - Homo sapiens mRNA for fibroblast growth factor receptor 4 isoform 1 precursor variant, clone: HEP01087.
AK225909 - Homo sapiens mRNA for fibroblast growth factor receptor 4 isoform 1 precursor variant, clone: FCC119D07.
L03840 - Human fibroblast growth factor receptor 4 (FGFR4) mRNA, complete cds.
JD453477 - Sequence 434501 from Patent EP1572962.
JD425163 - Sequence 406187 from Patent EP1572962.
JD180907 - Sequence 161931 from Patent EP1572962.
JD141669 - Sequence 122693 from Patent EP1572962.
AB209631 - Homo sapiens premature mRNA for fibroblast growth factor receptor 4 variant.
X57205 - Human FGFR-4 mRNA for fibroblast growth factor receptor (FGFR-4).
AF202063 - Homo sapiens fibroblast growth factor receptor 4, soluble-form splice variant (FGFR4) mRNA, complete cds.
EU826602 - Homo sapiens soluble FGFR4 variant 1 (FGFR4) mRNA, complete cds, alternatively spliced.
JD442397 - Sequence 423421 from Patent EP1572962.
AF359241 - Homo sapiens soluble truncated fibroblast growth factor receptor 4 (FGFR4) mRNA, complete cds.
EU826603 - Homo sapiens soluble FGFR4 variant 2 (FGFR4) mRNA, complete cds, alternatively spliced.
AB590389 - Synthetic construct DNA, clone: pFN21AE1340, Homo sapiens FGFR4 gene for fibroblast growth factor receptor 4, without stop codon, in Flexi system.
DQ893458 - Synthetic construct clone IMAGE:100006088; FLH193518.01X; RZPDo839H0178D fibroblast growth factor receptor 4 (FGFR4) gene, encodes complete protein.
DQ896348 - Synthetic construct Homo sapiens clone IMAGE:100010808; FLH193514.01L; RZPDo839H0168D fibroblast growth factor receptor 4 (FGFR4) gene, encodes complete protein.
JN007471 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-A allele, complete cds.
JN007472 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-B allele, complete cds.
JN007473 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-A allele, complete cds.
JN007474 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-B allele, complete cds.
JN007475 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-A allele, complete cds.
JN007476 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-B allele, complete cds.
JN007477 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-A allele, complete cds.
JN007478 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-B allele, complete cds.
JN007479 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-A allele, complete cds.
JN007480 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-B allele, complete cds.
JN007481 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-A allele, complete cds.
JN007482 - Homo sapiens fibroblast growth factor receptor 4 (FGFR4) mRNA, FGFR4-B allele, complete cds.
AF359246 - Homo sapiens fibroblast growth factor receptor 4 variant mRNA, complete cds.
M59373 - Human tyrosine kinase (JTK2) mRNA, partial cds.
JD195148 - Sequence 176172 from Patent EP1572962.
JD561061 - Sequence 542085 from Patent EP1572962.
JD538787 - Sequence 519811 from Patent EP1572962.
JD397329 - Sequence 378353 from Patent EP1572962.
JD193337 - Sequence 174361 from Patent EP1572962.
JD132925 - Sequence 113949 from Patent EP1572962.
JD127243 - Sequence 108267 from Patent EP1572962.
JD114804 - Sequence 95828 from Patent EP1572962.
DM110842 - Novel Cancer Marker and Use Thereof.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P22455 (Reactome details) participates in the following event(s):

R-HSA-190265 FGFR4 binds to FGF
R-HSA-1307955 FGFR4 binds HS:KLB:FGF19
R-HSA-2012086 Constitutive dimerization of FGFR4 Y367C mutant
R-HSA-1307963 Autocatalytic phosphorylation of BetaKlotho-bound FGFR4
R-HSA-190326 Autocatalytic phosphorylation of FGFR4
R-HSA-2038946 Dimerization of FGFR4 mutants with enhanced kinase activity
R-HSA-2012087 Autocatalytic phosphorylation of FGFR4 Y367C mutant
R-HSA-5654163 Activated FGFR4 binds PLCG1
R-HSA-5654422 Activated FGFR4 binds FRS2
R-HSA-5654425 Activated FGFR4 binds SHC1
R-HSA-5654651 Activated FGFR4 binds FRS3
R-HSA-5654169 p-4Y-PLCG1 dissociates from activated FGFR4
R-HSA-2038944 Autocatalytic phosphorylation of FGFR4 mutants with enhanced kinase activity
R-HSA-2046363 FGFR4 kinase mutants are inhibited by PD170734
R-HSA-5655313 Activated FGFR4 mutants bind PLCG1
R-HSA-5655351 Activated FGFR4 mutants bind FRS2
R-HSA-5655336 p-4Y-PLCG1 dissociates from activated FGFR4 mutants
R-HSA-5654151 Activated FGFR4 phosphorylates PLCG1
R-HSA-5654418 Activated FGFR4 phosphorylates FRS2
R-HSA-5654566 Activated ERK1/2 threonine-phosphorylates FGFR4-associated FRS2.
R-HSA-5654659 Activated FGFR4:p-FRS2 binds GRB2:GAB1:PIK3R1
R-HSA-5654653 Activated FGFR4 phosphorylates FRS3
R-HSA-5654428 Activated FGFR4 phosphorylates SHC1
R-HSA-5654423 Activated FGFR4:p-SHC1 binds GRB2:SOS1
R-HSA-5655341 Activated FGFR4 mutants phosphorylate PLCG1
R-HSA-5655284 Activated FGFR4 mutants phosphorylate FRS2
R-HSA-5655248 Activated FGFR4 mutants:p-FRS2 binds GRB2:GAB1:PIK3R1
R-HSA-5655348 Activated FGFR4 mutants:p-FRS2 binds GRB2-SOS1
R-HSA-5654662 Activated FGFR4:p-FRS2:GRB2:GAB1:PI3KR1 binds PIK3CA
R-HSA-5654667 Activated FGFR4:p-FRS2:p-PPTN11 binds GRB2:GAB1:PI3KR1
R-HSA-5654734 p-CBL:GRB2 binds p-FRS2:activated FGFR4
R-HSA-5654658 Activated FGFR4:p-FRS bind to PPTN11
R-HSA-5654664 Activated FGFR4:p-FRS binds GRB2:SOS1
R-HSA-5655252 Activated FGFR4 mutants:p-FRS2:GRB2:GAB1:PIK3R1 binds PIK3CA
R-HSA-5654669 Activated FGFR4:p-FRS2:p-PPTN11:GRB2:GAB1:PIK3R1binds PIK3CA
R-HSA-5654684 CBL ubiquitinates FRS2 and FGFR4
R-HSA-5654655 Activated FGFR4 phosphorylates PPTN11
R-HSA-5654426 Activated FGFR4:p-SHC1:GRB2:SOS1 activates RAS nucleotide exchange
R-HSA-5655347 Activated FGFR4 mutants:p-FRS2:GRB2:SOS1 activates RAS nucleotide exchange
R-HSA-5654717 FGFR4-associated PI3K phosphorylates PIP2 to PIP3
R-HSA-5654663 Activated FGFR4:p-FRS2:GRB2:SOS1 activates RAS nucleotide exchange
R-HSA-5672965 RAS GEFs promote RAS nucleotide exchange
R-HSA-5655235 Activated FGFR4 mutant-associated PI3K phosphorylates PIP2 to PIP3
R-HSA-2400009 PI3K inhibitors block PI3K catalytic activity
R-HSA-2316434 PI3K phosphorylates PIP2 to PIP3
R-HSA-5654714 FGFR4- and PTPN11-associated PI3K phosphorylates PIP2 to PIP3
R-HSA-109699 PI3K-containing complexes phosphorylate PIP2 to PIP3
R-HSA-190322 FGFR4 ligand binding and activation
R-HSA-1307965 betaKlotho-mediated ligand binding
R-HSA-1839128 FGFR4 mutant receptor activation
R-HSA-5654743 Signaling by FGFR4
R-HSA-5655291 Signaling by FGFR4 in disease
R-HSA-190236 Signaling by FGFR
R-HSA-5654228 Phospholipase C-mediated cascade; FGFR4
R-HSA-5654712 FRS-mediated FGFR4 signaling
R-HSA-5654719 SHC-mediated cascade:FGFR4
R-HSA-1226099 Signaling by FGFR in disease
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-5654733 Negative regulation of FGFR4 signaling
R-HSA-5654720 PI-3K cascade:FGFR4
R-HSA-5654716 Downstream signaling of activated FGFR4
R-HSA-5663202 Diseases of signal transduction
R-HSA-162582 Signal Transduction
R-HSA-1643685 Disease
R-HSA-5673001 RAF/MAP kinase cascade
R-HSA-2219530 Constitutive Signaling by Aberrant PI3K in Cancer
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-6811558 PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling
R-HSA-5684996 MAPK1/MAPK3 signaling
R-HSA-109704 PI3K Cascade
R-HSA-2219528 PI3K/AKT Signaling in Cancer
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-199418 Negative regulation of the PI3K/AKT network
R-HSA-5683057 MAPK family signaling cascades
R-HSA-112399 IRS-mediated signalling
R-HSA-74751 Insulin receptor signalling cascade
R-HSA-2428928 IRS-related events triggered by IGF1R
R-HSA-74752 Signaling by Insulin receptor
R-HSA-2428924 IGF1R signaling cascade
R-HSA-2404192 Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R)

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000292408.1, ENST00000292408.2, ENST00000292408.3, ENST00000292408.4, ENST00000292408.5, ENST00000292408.6, ENST00000292408.7, ENST00000292408.8, FGFR4_HUMAN, G3JVM2, G3JVM5, G3JVM7, G3JVM9, JTK2, NM_213647, O43785, P22455, Q14309, Q71TW8, Q8TDA0, Q96KE5, TKF, uc317lax.1, uc317lax.2
UCSC ID: ENST00000292408.9_7
RefSeq Accession: NM_213647.3
Protein: P22455 (aka FGFR4_HUMAN or FGR4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.