Human Gene FLG (ENST00000368799.2_6) from GENCODE V47lift37
  Description: filaggrin (from RefSeq NM_002016.2)
Gencode Transcript: ENST00000368799.2_6
Gencode Gene: ENSG00000143631.11_8
Transcript (Including UTRs)
   Position: hg19 chr1:152,274,641-152,297,715 Size: 23,075 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr1:152,275,176-152,287,932 Size: 12,757 Coding Exon Count: 2 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:152,274,641-152,297,715)mRNA (may differ from genome)Protein (4061 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FILA_HUMAN
DESCRIPTION: RecName: Full=Filaggrin;
FUNCTION: Aggregates keratin intermediate filaments and promotes disulfide-bond formation among the intermediate filaments during terminal differentiation of mammalian epidermis.
TISSUE SPECIFICITY: Keratohyalin granules.
PTM: Filaggrin is initially synthesized as a large, insoluble, highly phosphorylated precursor containing many tandem copies of 324 AA, which are not separated by large linker sequences. During terminal differentiation it is dephosphorylated and proteolytically cleaved. The N-terminal of the mature protein is heterogeneous, and is blocked by the formation of pyroglutamate.
PTM: Undergoes deimination of some arginine residues (citrullination).
DISEASE: Defects in FLG are the cause of ichthyosis vulgaris (VI) [MIM:146700]; also known as ichthyosis simplex. Ichthyosis vulgaris is the most common form of ichthyosis inherited as an autosomal dominant trait. It is characterized by palmar hyperlinearity, keratosis pilaris and a fine scale that is most prominent over the lower abdomen, arms, and legs. Ichthyosis vulgaris is characterized histologically by absent or reduced keratohyalin granules in the epidermis and mild hyperkeratosis. The disease can be associated with frequent asthma, eczema or hay fever.
DISEASE: Defects in FLG are a cause of susceptibility to dermatitis atopic type 2 (ATOD2) [MIM:605803]. Atopic dermatitis is a complex, inflammatory disease with multiple alleles at several loci thought to be involved in the pathogenesis. It commonly begins in infancy or early childhood and is characterized by a chronic relapsing form of skin inflammation, a disturbance of epidermal barrier function that culminates in dry skin, and IgE- mediated sensitization to food and environmental allergens. It is manifested by lichenification, excoriation, and crusting, mainly on the flexural surfaces of the elbow and knee.
SIMILARITY: Belongs to the S100-fused protein family.
SIMILARITY: Contains 2 EF-hand domains.
SIMILARITY: Contains 23 filaggrin repeats.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/FLG";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FLG
Diseases sorted by gene-association score: ichthyosis vulgaris* (1087), dermatitis, atopic 2* (594), dermatitis (54), atopic dermatitis (35), molluscum contagiosum (30), peanut allergy (24), eczema herpeticum (24), contact dermatitis (22), ichthyosis (19), ichthyosis, follicular (18), filamentary keratitis (16), epidermolytic hyperkeratosis (16), ichthyosis, congenital, autosomal recessive 4b (16), atopic dermatitis 3 (15), skin disease (15), burnett schwartz berberian syndrome (14), lichen planus (13), ichthyosis, x-linked (13), exercise-induced anaphylaxis (13), recessive dystrophic epidermolysis bullosa (11), epidermolysis bullosa dystrophica (11), keratosis (11), psoriasis (10), allergic contact dermatitis (10), irritant dermatitis (10), epidermolysis bullosa simplex (9), bowen's disease (9), epidermolysis bullosa pruriginosa (9), acne (9), bowenoid papulosis (9), chronic actinic dermatitis (9), netherton syndrome (9), cholesteatoma (9), latex allergy (9), food allergy (8), porokeratosis (7), discoid lupus erythematosus (7), clear cell acanthoma (7), nut allergy (7), papilloma (7), keratoacanthoma (6), asthma (6), egg allergy (6), epidermodysplasia verruciformis (6), eccrine sweat gland neoplasm (5), esophagitis, eosinophilic, 1 (5), epstein-barr virus-associated gastric carcinoma (5), pachyonychia congenita 1 (5), lichen disease (4), atopy (3), congenital ichthyosiform erythroderma (1), autosomal recessive congenital ichthyosis (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 217.66 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 350.08 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -11.8072-0.164 Picture PostScript Text
3' UTR -96.20535-0.180 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011992 - EF-hand-like_dom
IPR018247 - EF_Hand_1_Ca_BS
IPR018249 - EF_HAND_2
IPR003303 - Filaggrin
IPR020922 - Nucleoside-triphosphatase
IPR001751 - S100/CaBP-9k_CS
IPR013787 - S100_Ca-bd_sub

Pfam Domains:
PF01023 - S-100/ICaBP type calcium binding domain
PF03516 - Filaggrin

SCOP Domains:
47473 - EF-hand

ModBase Predicted Comparative 3D Structure on P20930
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005198 structural molecule activity
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0030280 structural constituent of epidermis
GO:0046872 metal ion binding
GO:0046914 transition metal ion binding

Biological Process:
GO:0007275 multicellular organism development
GO:0018149 peptide cross-linking
GO:0030216 keratinocyte differentiation
GO:0061436 establishment of skin barrier
GO:0070268 cornification

Cellular Component:
GO:0001533 cornified envelope
GO:0005634 nucleus
GO:0005829 cytosol
GO:0005882 intermediate filament
GO:0036457 keratohyalin granule
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  M60502 - Human profilaggrin mRNA, 3' end.
JD507957 - Sequence 488981 from Patent EP1572962.
JD515383 - Sequence 496407 from Patent EP1572962.
JD349605 - Sequence 330629 from Patent EP1572962.
JD062170 - Sequence 43194 from Patent EP1572962.
GU014833 - Synthetic construct Homo sapiens clone IMAGE:100068737; MGC:198451 filaggrin (FLG) gene, encodes complete protein.
JD286964 - Sequence 267988 from Patent EP1572962.
JD197506 - Sequence 178530 from Patent EP1572962.
JD346142 - Sequence 327166 from Patent EP1572962.
JD051691 - Sequence 32715 from Patent EP1572962.
JD499279 - Sequence 480303 from Patent EP1572962.
JD493374 - Sequence 474398 from Patent EP1572962.
JD147634 - Sequence 128658 from Patent EP1572962.
JD114723 - Sequence 95747 from Patent EP1572962.
JD189060 - Sequence 170084 from Patent EP1572962.
JD219411 - Sequence 200435 from Patent EP1572962.
JD278049 - Sequence 259073 from Patent EP1572962.
JD278050 - Sequence 259074 from Patent EP1572962.
JD196508 - Sequence 177532 from Patent EP1572962.
JD427224 - Sequence 408248 from Patent EP1572962.
JD375101 - Sequence 356125 from Patent EP1572962.
JD469231 - Sequence 450255 from Patent EP1572962.
JD114723 - Sequence 95747 from Patent EP1572962.
JD189060 - Sequence 170084 from Patent EP1572962.
JD102601 - Sequence 83625 from Patent EP1572962.
JD219407 - Sequence 200431 from Patent EP1572962.
JD469899 - Sequence 450923 from Patent EP1572962.
JD470355 - Sequence 451379 from Patent EP1572962.
JD278050 - Sequence 259074 from Patent EP1572962.
JD278049 - Sequence 259073 from Patent EP1572962.
JD456134 - Sequence 437158 from Patent EP1572962.
JD063680 - Sequence 44704 from Patent EP1572962.
JD376220 - Sequence 357244 from Patent EP1572962.
JD196508 - Sequence 177532 from Patent EP1572962.
JD124681 - Sequence 105705 from Patent EP1572962.
JD362583 - Sequence 343607 from Patent EP1572962.
JD427224 - Sequence 408248 from Patent EP1572962.
JD493374 - Sequence 474398 from Patent EP1572962.
JD469231 - Sequence 450255 from Patent EP1572962.
JD114723 - Sequence 95747 from Patent EP1572962.
JD189060 - Sequence 170084 from Patent EP1572962.
JD491662 - Sequence 472686 from Patent EP1572962.
JD219408 - Sequence 200432 from Patent EP1572962.
JD209957 - Sequence 190981 from Patent EP1572962.
JD216501 - Sequence 197525 from Patent EP1572962.
AB208881 - Homo sapiens mRNA for PREDICTED: filaggrin variant protein.
JD196508 - Sequence 177532 from Patent EP1572962.
JD427224 - Sequence 408248 from Patent EP1572962.
JD337107 - Sequence 318131 from Patent EP1572962.
JD493374 - Sequence 474398 from Patent EP1572962.
JD469231 - Sequence 450255 from Patent EP1572962.
JD114723 - Sequence 95747 from Patent EP1572962.
JD189060 - Sequence 170084 from Patent EP1572962.
M24355 - Human filaggrin gene, partial cds.
JD491662 - Sequence 472686 from Patent EP1572962.
JD219408 - Sequence 200432 from Patent EP1572962.
JD209957 - Sequence 190981 from Patent EP1572962.
JD216501 - Sequence 197525 from Patent EP1572962.
JD196508 - Sequence 177532 from Patent EP1572962.
JD427224 - Sequence 408248 from Patent EP1572962.
JD337107 - Sequence 318131 from Patent EP1572962.
JD375101 - Sequence 356125 from Patent EP1572962.
JD513357 - Sequence 494381 from Patent EP1572962.
JD375887 - Sequence 356911 from Patent EP1572962.
JD219409 - Sequence 200433 from Patent EP1572962.
JD470356 - Sequence 451380 from Patent EP1572962.
JD278049 - Sequence 259073 from Patent EP1572962.
JD278050 - Sequence 259074 from Patent EP1572962.
JD196508 - Sequence 177532 from Patent EP1572962.
JD427224 - Sequence 408248 from Patent EP1572962.
JD337107 - Sequence 318131 from Patent EP1572962.
JD469231 - Sequence 450255 from Patent EP1572962.
JD114723 - Sequence 95747 from Patent EP1572962.
JD189060 - Sequence 170084 from Patent EP1572962.
JD470356 - Sequence 451380 from Patent EP1572962.
JD196508 - Sequence 177532 from Patent EP1572962.
JD375101 - Sequence 356125 from Patent EP1572962.
JD513357 - Sequence 494381 from Patent EP1572962.
JD278049 - Sequence 259073 from Patent EP1572962.
JD278050 - Sequence 259074 from Patent EP1572962.
JD124681 - Sequence 105705 from Patent EP1572962.
JD124681 - Sequence 105705 from Patent EP1572962.
JD114723 - Sequence 95747 from Patent EP1572962.
JD189060 - Sequence 170084 from Patent EP1572962.
JD470355 - Sequence 451379 from Patent EP1572962.
JD278050 - Sequence 259074 from Patent EP1572962.
JD278049 - Sequence 259073 from Patent EP1572962.
JD063680 - Sequence 44704 from Patent EP1572962.
JD376220 - Sequence 357244 from Patent EP1572962.
JD124681 - Sequence 105705 from Patent EP1572962.
JD469231 - Sequence 450255 from Patent EP1572962.
JD114723 - Sequence 95747 from Patent EP1572962.
JD189060 - Sequence 170084 from Patent EP1572962.
JD469899 - Sequence 450923 from Patent EP1572962.
JD063680 - Sequence 44704 from Patent EP1572962.
JD196508 - Sequence 177532 from Patent EP1572962.
M60499 - Human profilaggrin mRNA, 5' end.
JD337107 - Sequence 318131 from Patent EP1572962.
JD375101 - Sequence 356125 from Patent EP1572962.
JD147634 - Sequence 128658 from Patent EP1572962.
JD114723 - Sequence 95747 from Patent EP1572962.
JD189060 - Sequence 170084 from Patent EP1572962.
M60495 - Human profilaggrin mRNA, 5' end.
M60500 - Human profilaggrin mRNA, 5' end.
JD337107 - Sequence 318131 from Patent EP1572962.
L01090 - Human profilaggrin (FLG) gene exons 1-3, 5' end.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P20930 (Reactome details) participates in the following event(s):

R-HSA-8942224 Filaggrin binds Keratin tonofilament:Desmosome
R-HSA-8849797 Membrane proteases cleave Profilaggrin producing Filaggrin
R-HSA-8934819 Cytoplasmic proteases cleave Profilaggrin producing Filaggrin
R-HSA-6809371 Formation of the cornified envelope
R-HSA-6805567 Keratinization
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000368799.1, FILA_HUMAN, NM_002016, P20930, Q01720, Q5T583, Q9UC71, uc318hbo.1, uc318hbo.2
UCSC ID: ENST00000368799.2_6
RefSeq Accession: NM_002016.2
Protein: P20930 (aka FILA_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.