Human Gene FLNC (ENST00000325888.13_6) from GENCODE V47lift37
  Description: filamin C, transcript variant 1 (from RefSeq NM_001458.5)
Gencode Transcript: ENST00000325888.13_6
Gencode Gene: ENSG00000128591.17_9
Transcript (Including UTRs)
   Position: hg19 chr7:128,470,460-128,499,326 Size: 28,867 Total Exon Count: 48 Strand: +
Coding Region
   Position: hg19 chr7:128,470,692-128,498,577 Size: 27,886 Coding Exon Count: 48 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:128,470,460-128,499,326)mRNA (may differ from genome)Protein (2725 aa)
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-  Comments and Description Text from UniProtKB
  ID: FLNC_HUMAN
DESCRIPTION: RecName: Full=Filamin-C; Short=FLN-C; Short=FLNc; AltName: Full=ABP-280-like protein; AltName: Full=ABP-L; AltName: Full=Actin-binding-like protein; AltName: Full=Filamin-2; AltName: Full=Gamma-filamin;
FUNCTION: Muscle-specific filamin, which plays a central role in muscle cells, probably by functioning as a large actin-cross- linking protein. May be involved in reorganizing the actin cytoskeleton in response to signaling events, and may also display structural functions at the Z lines in muscle cells. Critical for normal myogenesis and for maintaining the structural integrity of the muscle fibers.
SUBUNIT: Homodimer. Interacts with KY. Interacts with IGFN1 (By similarity). Interacts with FLNB, KCND2, ITGB1A, INPPL1, MYOT, MYOZ1 and MYOZ3. Interacts with sarcoglycans SGCD and SGCG. Interacts (via filament repeats 17-18, 20-21 and 24) with USP25 (isoform USP25m only). Interacts with FBLIM1.
INTERACTION: P00519:ABL1; NbExp=2; IntAct=EBI-489954, EBI-375543; P46108:CRK; NbExp=2; IntAct=EBI-489954, EBI-886; O75923:DYSF; NbExp=3; IntAct=EBI-489954, EBI-2799016; P62993:GRB2; NbExp=2; IntAct=EBI-489954, EBI-401755; Q9UBF9:MYOT; NbExp=6; IntAct=EBI-489954, EBI-296701;
SUBCELLULAR LOCATION: Cytoplasm. Membrane; Peripheral membrane protein. Cytoplasm, cytoskeleton. Cytoplasm, myofibril, sarcomere, Z line. Note=A small amount localizes at membranes. In striated muscle cells, it predominantly localizes in myofibrillar Z lines, while a minor fraction localizes with subsarcolemme.
TISSUE SPECIFICITY: Highly expressed in striated muscles. Weakly expressed in thyroid, fetal brain, fetal lung, retina, spinal cord and bone marrow. Not expressed in testis, pancreas, adrenal gland, placenta, liver and kidney.
DEVELOPMENTAL STAGE: Expressed in both differentiating and adult muscles.
DOMAIN: The intradomain insert is specific to FLNC and mediates the targeting to developing and mature Z lines.
DOMAIN: Comprised of a NH2-terminal actin-binding domain, 24 internally homologous repeats and two hinge regions. Repeat 24 and the second hinge domain are important for dimer formation.
DOMAIN: The filamin 20 repeat mediates interaction with XIRP1.
DISEASE: Defects in FLNC are the cause of myopathy myofibrillar type 5 (MFM5) [MIM:609524]. A neuromuscular disorder, usually with an adult onset, characterized by focal myofibrillar destruction and pathological cytoplasmic protein aggregations, and clinical features of a limb-girdle myopathy.
DISEASE: Defects in FLNC are the cause of myopathy distal type 4 (MPD4) [MIM:614065]. MPD4 is a slowly progressive muscular disorder characterized by distal muscle weakness and atrophy affecting the upper and lower limbs. Onset occurs around the third to fourth decades of life, and patients remain ambulatory even after long disease duration. Muscle biopsy shows non-specific changes with no evidence of rods, necrosis, or inflammation.
MISCELLANEOUS: Silenced in MKN28 and MKN74 gastric cancer cell lines due to aberrant methylation of the gene.
SIMILARITY: Belongs to the filamin family.
SIMILARITY: Contains 1 actin-binding domain.
SIMILARITY: Contains 2 CH (calponin-homology) domains.
SIMILARITY: Contains 24 filamin repeats.
SEQUENCE CAUTION: Sequence=AAD12245.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAF68195.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAF80245.1; Type=Frameshift; Positions=2578, 2580, 2590; Sequence=CAA49688.1; Type=Frameshift; Positions=778, 787;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/FLNC";

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FLNC
Diseases sorted by gene-association score: myopathy, distal, 4* (1679), myopathy, myofibrillar, 5* (1376), cardiomyopathy, familial hypertrophic, 26* (1230), flnc-related familial restrictive cardiomyopathy* (500), familial isolated restrictive cardiomyopathy* (175), muscular dystrophy, limb-girdle, type 1a (19), middle lobe syndrome (16), myofibrillar myopathy (14), opportunistic mycosis (14), pulmonary aspergilloma (12), tinea capitis (11), lung abscess (11), autosomal dominant limb-girdle muscular dystrophy (9), cardiac rupture (9), fungal meningitis (8), myopathy, myofibrillar, 3 (8), myopathy (7), lipid pneumonia (6), myopathy, myofibrillar, 2 (6), pneumocystosis (6), bronchial disease (6), dermatophytosis (5), cardiomyopathy, familial hypertrophic (5), atelosteogenesis (5), cardiomyopathy (5), paranasal sinus disease (4), myopathy, spheroid body (4), myopathy, tubular aggregate, 1 (4), hajdu-cheney syndrome (4), muscular dystrophy (3), respiratory system disease (2), autosomal genetic disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 450.08 RPKM in Muscle - Skeletal
Total median expression: 1723.56 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -83.30232-0.359 Picture PostScript Text
3' UTR -294.90749-0.394 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001589 - Actinin_actin-bd_CS
IPR001715 - CH-domain
IPR003961 - Fibronectin_type3
IPR001298 - Filamin
IPR017868 - Filamin/ABP280_repeat-like
IPR013783 - Ig-like_fold
IPR014756 - Ig_E-set

Pfam Domains:
PF00307 - Calponin homology (CH) domain
PF00630 - Filamin/ABP280 repeat

SCOP Domains:
47576 - Calponin-homology domain, CH-domain
49373 - Invasin/intimin cell-adhesion fragments
81296 - E set domains
141729 - FimD N-terminal domain-like
49785 - Galactose-binding domain-like
49863 - Hyaluronate lyase-like, C-terminal domain
49464 - Carboxypeptidase regulatory domain-like
49478 - Cna protein B-type domain
52954 - Class II aaRS ABD-related
53067 - Actin-like ATPase domain
55550 - SH2 domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1V05 - X-ray MuPIT 2D7M - NMR MuPIT 2D7N - NMR MuPIT 2D7O - NMR MuPIT 2D7P - NMR MuPIT 2D7Q - NMR MuPIT 2K9U - NMR MuPIT 2NQC - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q14315
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0005515 protein binding
GO:0008092 cytoskeletal protein binding
GO:0030506 ankyrin binding
GO:0042802 identical protein binding
GO:0051015 actin filament binding

Biological Process:
GO:0034329 cell junction assembly
GO:0048747 muscle fiber development

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005925 focal adhesion
GO:0016020 membrane
GO:0016528 sarcoplasm
GO:0030018 Z disc
GO:0042383 sarcolemma
GO:0043034 costamere


-  Descriptions from all associated GenBank mRNAs
  LF212010 - JP 2014500723-A/19513: Polycomb-Associated Non-Coding RNAs.
AB371585 - Homo sapiens FLNC mRNA for filamin C, complete cds, clone: HP07616-ARi57A02.
AF146692 - Homo sapiens filamin 2 (FLN2) mRNA, complete cds.
AF089841 - Homo sapiens gamma-filamin (ABPL) mRNA, complete cds.
AJ012737 - Homo sapiens mRNA for filamin, muscle isoform.
JD414080 - Sequence 395104 from Patent EP1572962.
X70083 - H.sapiens ABP-280-like mRNA for filamin (695 bps).
AB208865 - Homo sapiens mRNA for gamma filamin variant protein.
X70084 - H.sapiens ABP-280-like mRNA for filamin (1296 bps).
AK126540 - Homo sapiens cDNA FLJ44576 fis, clone UTERU3018616.
AK001048 - Homo sapiens cDNA FLJ10186 fis, clone HEMBA1004534, highly similar to Filamin-C.
JD429871 - Sequence 410895 from Patent EP1572962.
JD248751 - Sequence 229775 from Patent EP1572962.
JD058730 - Sequence 39754 from Patent EP1572962.
JD099156 - Sequence 80180 from Patent EP1572962.
JD056266 - Sequence 37290 from Patent EP1572962.
JD090305 - Sequence 71329 from Patent EP1572962.
JD209511 - Sequence 190535 from Patent EP1572962.
JD186417 - Sequence 167441 from Patent EP1572962.
JD550701 - Sequence 531725 from Patent EP1572962.
JD460992 - Sequence 442016 from Patent EP1572962.
JD252576 - Sequence 233600 from Patent EP1572962.
MA447587 - JP 2018138019-A/19513: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q14315 (Reactome details) participates in the following event(s):

R-HSA-430347 MigFilin associates with Filamin and F-actin
R-HSA-446353 Cell-extracellular matrix interactions
R-HSA-446728 Cell junction organization
R-HSA-1500931 Cell-Cell communication

-  Other Names for This Gene
  Alternate Gene Symbols: ABPL, B2ZZ88, ENST00000325888.1, ENST00000325888.10, ENST00000325888.11, ENST00000325888.12, ENST00000325888.2, ENST00000325888.3, ENST00000325888.4, ENST00000325888.5, ENST00000325888.6, ENST00000325888.7, ENST00000325888.8, ENST00000325888.9, FLN2, FLNC_HUMAN, NM_001458, O95303, Q07985, Q14315, Q9NS12, Q9NYE5, Q9UMR8, Q9Y503, uc317ryd.1, uc317ryd.2
UCSC ID: ENST00000325888.13_6
RefSeq Accession: NM_001458.5
Protein: Q14315 (aka FLNC_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.