Human Gene FLOT2 (ENST00000394908.9_9) from GENCODE V47lift37
  Description: flotillin 2, transcript variant 1 (from RefSeq NM_004475.3)
Gencode Transcript: ENST00000394908.9_9
Gencode Gene: ENSG00000132589.16_14
Transcript (Including UTRs)
   Position: hg19 chr17:27,206,357-27,224,751 Size: 18,395 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr17:27,207,579-27,224,592 Size: 17,014 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:27,206,357-27,224,751)mRNA (may differ from genome)Protein (428 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FLOT2_HUMAN
DESCRIPTION: RecName: Full=Flotillin-2; AltName: Full=Epidermal surface antigen; Short=ESA; AltName: Full=Membrane component chromosome 17 surface marker 1;
FUNCTION: May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles. May be involved in epidermal cell adhesion and epidermal structure and function.
SUBUNIT: Heterooligomeric complex of flotillin-1 and flotillin-2 and caveolin-1 and caveolin-2 (By similarity). Interacts with ECM29.
SUBCELLULAR LOCATION: Cell membrane; Peripheral membrane protein. Membrane, caveola; Peripheral membrane protein. Endosome. Note=Membrane-associated protein of caveolae.
TISSUE SPECIFICITY: In skin, expressed in epidermis and epidermal appendages but not in dermis. Expressed in all layers of the epidermis except the basal layer. In hair follicles, expressed in the suprabasal layer but not the basal layer. Also expressed in melanoma and carcinoma cell lines, fibroblasts and foreskin melanocytes.
PTM: ZDHHC5-catalyzed palmitoylation predominantly occurs at Cys- 4. ZDHHC5-catalyzed palmitoylation may be required for the formation of higher-order complexes and for neurite outgrowth in cultured neural stem cells.
SIMILARITY: Belongs to the band 7/mec-2 family. Flotillin subfamily.
SEQUENCE CAUTION: Sequence=AAA65729.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 202.11 RPKM in Whole Blood
Total median expression: 2192.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -91.40159-0.575 Picture PostScript Text
3' UTR -444.671222-0.364 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001107 - Band_7

Pfam Domains:
PF01145 - SPFH domain / Band 7 family

SCOP Domains:
117892 - Band 7/SPFH domain

ModBase Predicted Comparative 3D Structure on Q14254
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0002020 protease binding
GO:0005515 protein binding
GO:0035255 ionotropic glutamate receptor binding
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0001765 membrane raft assembly
GO:0007155 cell adhesion
GO:0008544 epidermis development
GO:0010629 negative regulation of gene expression
GO:0044860 protein localization to plasma membrane raft
GO:0045661 regulation of myoblast differentiation
GO:0050821 protein stabilization
GO:0072659 protein localization to plasma membrane
GO:1902992 negative regulation of amyloid precursor protein catabolic process
GO:1903905 positive regulation of establishment of T cell polarity
GO:0034114 regulation of heterotypic cell-cell adhesion
GO:0034139 regulation of toll-like receptor 3 signaling pathway

Cellular Component:
GO:0001931 uropod
GO:0002080 acrosomal membrane
GO:0005768 endosome
GO:0005886 plasma membrane
GO:0005901 caveola
GO:0005913 cell-cell adherens junction
GO:0005925 focal adhesion
GO:0016020 membrane
GO:0016323 basolateral plasma membrane
GO:0016600 flotillin complex
GO:0030027 lamellipodium
GO:0030139 endocytic vesicle
GO:0031410 cytoplasmic vesicle
GO:0031982 vesicle
GO:0044291 cell-cell contact zone
GO:0045121 membrane raft
GO:0048471 perinuclear region of cytoplasm
GO:0070062 extracellular exosome
GO:0030864 cortical actin cytoskeleton
GO:0016324 apical plasma membrane


-  Descriptions from all associated GenBank mRNAs
  AK225491 - Homo sapiens mRNA for flotillin 2 variant, clone: JTH06502.
BC017292 - Homo sapiens flotillin 2, mRNA (cDNA clone IMAGE:4907083), partial cds.
BC003683 - Homo sapiens flotillin 2, mRNA (cDNA clone MGC:5052 IMAGE:3461759), complete cds.
M60922 - Human surface antigen mRNA, complete cds.
KJ901430 - Synthetic construct Homo sapiens clone ccsbBroadEn_10824 FLOT2 gene, encodes complete protein.
JD153960 - Sequence 134984 from Patent EP1572962.
JD270672 - Sequence 251696 from Patent EP1572962.
JD157263 - Sequence 138287 from Patent EP1572962.
JD392744 - Sequence 373768 from Patent EP1572962.
JD210947 - Sequence 191971 from Patent EP1572962.
JD464320 - Sequence 445344 from Patent EP1572962.
JD047920 - Sequence 28944 from Patent EP1572962.
JD346785 - Sequence 327809 from Patent EP1572962.
JD242167 - Sequence 223191 from Patent EP1572962.
JD255281 - Sequence 236305 from Patent EP1572962.
JD232196 - Sequence 213220 from Patent EP1572962.
JD463558 - Sequence 444582 from Patent EP1572962.
JD241631 - Sequence 222655 from Patent EP1572962.
JD256145 - Sequence 237169 from Patent EP1572962.
JD477048 - Sequence 458072 from Patent EP1572962.
JD343537 - Sequence 324561 from Patent EP1572962.
JD167045 - Sequence 148069 from Patent EP1572962.
JD523983 - Sequence 505007 from Patent EP1572962.
JD306520 - Sequence 287544 from Patent EP1572962.
JD241545 - Sequence 222569 from Patent EP1572962.
JD370896 - Sequence 351920 from Patent EP1572962.
JD065244 - Sequence 46268 from Patent EP1572962.
JD493505 - Sequence 474529 from Patent EP1572962.
JD290419 - Sequence 271443 from Patent EP1572962.
JD423641 - Sequence 404665 from Patent EP1572962.
JD538486 - Sequence 519510 from Patent EP1572962.
JD561731 - Sequence 542755 from Patent EP1572962.
JD269765 - Sequence 250789 from Patent EP1572962.
JD322026 - Sequence 303050 from Patent EP1572962.
JD151270 - Sequence 132294 from Patent EP1572962.
JD256164 - Sequence 237188 from Patent EP1572962.
JD515124 - Sequence 496148 from Patent EP1572962.
JD170989 - Sequence 152013 from Patent EP1572962.
JD409687 - Sequence 390711 from Patent EP1572962.
JD386638 - Sequence 367662 from Patent EP1572962.
JD062657 - Sequence 43681 from Patent EP1572962.
CR542265 - Homo sapiens full open reading frame cDNA clone RZPDo834E0326D for gene FLOT2, flotillin 2; complete cds, incl. stopcodon.
KJ901429 - Synthetic construct Homo sapiens clone ccsbBroadEn_10823 FLOT2 gene, encodes complete protein.
BT019477 - Homo sapiens flotillin 2 mRNA, complete cds.
BT019478 - Homo sapiens flotillin 2 mRNA, complete cds.
DQ892691 - Synthetic construct clone IMAGE:100005321; FLH188919.01X; RZPDo839H0673D flotillin 2 (FLOT2) gene, encodes complete protein.
DQ895935 - Synthetic construct Homo sapiens clone IMAGE:100010395; FLH188915.01L; RZPDo839H0663D flotillin 2 (FLOT2) gene, encodes complete protein.
CR541784 - Homo sapiens full open reading frame cDNA clone RZPDo834G0730D for gene FLOT2, flotillin 2; complete cds, without stopcodon.
AB528533 - Synthetic construct DNA, clone: pF1KB5024, Homo sapiens FLOT2 gene for flotillin 2, without stop codon, in Flexi system.
CU678570 - Synthetic construct Homo sapiens gateway clone IMAGE:100019185 5' read FLOT2 mRNA.
CU677899 - Synthetic construct Homo sapiens gateway clone IMAGE:100017629 5' read FLOT2 mRNA.
JD023165 - Sequence 4189 from Patent EP1572962.
JD032948 - Sequence 13972 from Patent EP1572962.
JD077553 - Sequence 58577 from Patent EP1572962.
JD020745 - Sequence 1769 from Patent EP1572962.
JD028036 - Sequence 9060 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q14254 (Reactome details) participates in the following event(s):

R-HSA-8849908 SALM4 binds flotillin-1
R-HSA-8849932 Synaptic adhesion-like molecules
R-HSA-6794362 Protein-protein interactions at synapses
R-HSA-112316 Neuronal System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000394908.1, ENST00000394908.2, ENST00000394908.3, ENST00000394908.4, ENST00000394908.5, ENST00000394908.6, ENST00000394908.7, ENST00000394908.8, ESA1, FLOT2_HUMAN, M17S1, NM_004475, Q14254, uc318xab.1, uc318xab.2
UCSC ID: ENST00000394908.9_9
RefSeq Accession: NM_004475.3
Protein: Q14254 (aka FLOT2_HUMAN or FLT2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.