Human Gene FOXK1 (ENST00000328914.5_4) from GENCODE V47lift37
  Description: forkhead box K1 (from RefSeq NM_001037165.2)
Gencode Transcript: ENST00000328914.5_4
Gencode Gene: ENSG00000164916.11_8
Transcript (Including UTRs)
   Position: hg19 chr7:4,721,926-4,811,073 Size: 89,148 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr7:4,721,940-4,802,095 Size: 80,156 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:4,721,926-4,811,073)mRNA (may differ from genome)Protein (733 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FOXK1_HUMAN
DESCRIPTION: RecName: Full=Forkhead box protein K1; AltName: Full=Myocyte nuclear factor; Short=MNF;
FUNCTION: Transcriptional regulator that binds to the upstream enhancer region (CCAC box) of myoglobin gene. Has a role in myogenic differentiation and in remodeling processes of adult muscles that occur in response to physiological stimuli (By similarity).
SUBUNIT: Interacts with SIN3B to form a complex which represses transcription (By similarity).
INTERACTION: P14316:IRF2; NbExp=2; IntAct=EBI-2509974, EBI-2866589;
SUBCELLULAR LOCATION: Nucleus (Probable).
TISSUE SPECIFICITY: Expressed both developing and adult tissues. In adults, significant expression is seen in tumors of the brain, colon and lymph node.
SIMILARITY: Contains 1 FHA domain.
SIMILARITY: Contains 1 fork-head DNA-binding domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FOXK1
Diseases sorted by gene-association score: contagious pustular dermatitis (17), thyroid angiosarcoma (16), thyroid sarcoma (16), pericardium cancer (11), benign breast phyllodes tumor (11), pericardial mesothelioma (7), placenta praevia (7), pancreatic endocrine carcinoma (7), histidinemia (6), histidine metabolism disease (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.24 RPKM in Pituitary
Total median expression: 230.80 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -3780.808978-0.421 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000253 - FHA_dom
IPR008984 - SMAD_FHA_domain
IPR001766 - TF_fork_head
IPR018122 - TF_fork_head_CS
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00250 - Forkhead domain
PF00498 - FHA domain

SCOP Domains:
101447 - Formin homology 2 domain (FH2 domain)
46785 - "Winged helix" DNA-binding domain
49879 - SMAD/FHA domain
53218 - Molybdenum cofactor biosynthesis proteins

ModBase Predicted Comparative 3D Structure on P85037
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0007275 multicellular organism development
GO:0007517 muscle organ development
GO:0009653 anatomical structure morphogenesis
GO:0016579 protein deubiquitination
GO:0030154 cell differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045893 positive regulation of transcription, DNA-templated

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  BC038434 - Homo sapiens forkhead box K1, mRNA (cDNA clone IMAGE:5164497).
JD458232 - Sequence 439256 from Patent EP1572962.
JD458497 - Sequence 439521 from Patent EP1572962.
AX721089 - Sequence 49 from Patent WO0220754.
AK302243 - Homo sapiens cDNA FLJ55600 complete cds, highly similar to Homo sapiens forkhead box K1 (FOXK1), mRNA.
AK122663 - Homo sapiens cDNA FLJ16099 fis, clone TESTI2008278, highly similar to Homo sapiens forkhead box K1 (FOXK1), mRNA.
BC169199 - Synthetic construct Homo sapiens clone IMAGE:9093263 forkhead box K1 (FOXK1) gene, partial cds.
AK027883 - Homo sapiens cDNA FLJ14977 fis, clone THYRO1001809, highly similar to MYOCYTE NUCLEAR FACTOR.
DQ581689 - Homo sapiens piRNA piR-49801, complete sequence.
DQ594212 - Homo sapiens piRNA piR-60324, complete sequence.
DQ578488 - Homo sapiens piRNA piR-46600, complete sequence.
AK022628 - Homo sapiens cDNA FLJ12566 fis, clone NT2RM4000852.
DQ600521 - Homo sapiens piRNA piR-38587, complete sequence.
BC039159 - Homo sapiens, clone IMAGE:4747087, mRNA.
JD431819 - Sequence 412843 from Patent EP1572962.
JD271861 - Sequence 252885 from Patent EP1572962.
JD465137 - Sequence 446161 from Patent EP1572962.
JD513581 - Sequence 494605 from Patent EP1572962.
JD180966 - Sequence 161990 from Patent EP1572962.
JD347039 - Sequence 328063 from Patent EP1572962.
JD376069 - Sequence 357093 from Patent EP1572962.
JD497801 - Sequence 478825 from Patent EP1572962.
JD068935 - Sequence 49959 from Patent EP1572962.
JD543133 - Sequence 524157 from Patent EP1572962.
JD543134 - Sequence 524158 from Patent EP1572962.
JD543135 - Sequence 524159 from Patent EP1572962.
JD478469 - Sequence 459493 from Patent EP1572962.
JD478470 - Sequence 459494 from Patent EP1572962.
JD140387 - Sequence 121411 from Patent EP1572962.
JD461980 - Sequence 443004 from Patent EP1572962.
JD463723 - Sequence 444747 from Patent EP1572962.
JD148201 - Sequence 129225 from Patent EP1572962.
JD249642 - Sequence 230666 from Patent EP1572962.
JD511291 - Sequence 492315 from Patent EP1572962.
JD095378 - Sequence 76402 from Patent EP1572962.
JD307022 - Sequence 288046 from Patent EP1572962.
JD322904 - Sequence 303928 from Patent EP1572962.
JD194334 - Sequence 175358 from Patent EP1572962.
JD401518 - Sequence 382542 from Patent EP1572962.
JD401519 - Sequence 382543 from Patent EP1572962.
JD401520 - Sequence 382544 from Patent EP1572962.
JD424988 - Sequence 406012 from Patent EP1572962.
JD366387 - Sequence 347411 from Patent EP1572962.
JD240825 - Sequence 221849 from Patent EP1572962.
JD482604 - Sequence 463628 from Patent EP1572962.
JD208248 - Sequence 189272 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P85037 (Reactome details) participates in the following event(s):

R-HSA-5689630 BAP1 binds BAP1-interacting complex
R-HSA-5690790 Histone H2A is dubiquitinated by the PR-DUB complex
R-HSA-5689603 UCH proteinases
R-HSA-5688426 Deubiquitination
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000328914.1, ENST00000328914.2, ENST00000328914.3, ENST00000328914.4, FOXK1 , FOXK1_HUMAN, MNF , NM_001037165, P85037, uc317sps.1, uc317sps.2
UCSC ID: ENST00000328914.5_4
RefSeq Accession: NM_001037165.2
Protein: P85037 (aka FOXK1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.