Human Gene FOXO3 (ENST00000406360.2_5) from GENCODE V47lift37
  Description: forkhead box O3, transcript variant 1 (from RefSeq NM_001455.4)
Gencode Transcript: ENST00000406360.2_5
Gencode Gene: ENSG00000118689.15_8
Transcript (Including UTRs)
   Position: hg19 chr6:108,882,120-109,005,977 Size: 123,858 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr6:108,882,412-108,986,058 Size: 103,647 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:108,882,120-109,005,977)mRNA (may differ from genome)Protein (673 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FOXO3_HUMAN
DESCRIPTION: RecName: Full=Forkhead box protein O3; AltName: Full=AF6q21 protein; AltName: Full=Forkhead in rhabdomyosarcoma-like 1;
FUNCTION: Transcriptional activator which triggers apoptosis in the absence of survival factors, including neuronal cell death upon oxidative stress. Recognizes and binds to the DNA sequence 5'-[AG]TAAA[TC]A-3'. Participates in post-transcriptional regulation of MYC: following phosphorylation by MAPKAPK5, promotes induction of miR-34b and miR-34c expression, 2 post- transcriptional regulators of MYC that bind to the 3'UTR of MYC transcript and prevent its translation.
SUBUNIT: Interacts with YWHAB/14-3-3-beta and YWHAZ/14-3-3-zeta, which are required for cytosolic sequestration. Upon oxidative stress, interacts with STK4/MST1, which disrupts interaction with YWHAB/14-3-3-beta and leads to nuclear translocation. Interacts with PIM1. Interacts with DDIT3/CHOP.
INTERACTION: Q08050:FOXM1; NbExp=2; IntAct=EBI-1644164, EBI-866480; P51610:HCFC1; NbExp=2; IntAct=EBI-1644164, EBI-396176; Q96EB6:SIRT1; NbExp=5; IntAct=EBI-1644164, EBI-1802965; Q13485:SMAD4; NbExp=4; IntAct=EBI-1644164, EBI-347263;
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Nucleus. Note=Translocates to the nucleus upon oxidative stress and in the absence of survival factors.
TISSUE SPECIFICITY: Ubiquitous.
PTM: In the presence of survival factors such as IGF-1, phosphorylated on Thr-32 and Ser-253 by AKT1/PKB. This phosphorylated form then interacts with 14-3-3 proteins and is retained in the cytoplasm. Survival factor withdrawal induces dephosphorylation and promotes translocation to the nucleus where the dephosphorylated protein induces transcription of target genes and triggers apoptosis. Although AKT1/PKB doesn't appear to phosphorylate Ser-315 directly, it may activate other kinases that trigger phosphorylation at this residue. Phosphorylated by STK4/MST1 on Ser-209 upon oxidative stress, which leads to dissociation from YWHAB/14-3-3-beta and nuclear translocation. Phosphorylated by PIM1. Phosphorylation by AMPK leads to the activation of transcriptional activity without affecting subcellular localization. Phosphorylation by MAPKAPK5 promotes nuclear localization and DNA-binding, leading to induction of miR- 34b and miR-34c expression, 2 post-transcriptional regulators of MYC that bind to the 3'UTR of MYC transcript and prevent its translation.
PTM: Heavyly methylated by SET9 which decreases stability, while moderately increasing transcriptional activity. The main methylation site is Lys-271. Methylation doesn't affect subcellular location.
DISEASE: Note=A chromosomal aberration involving FOXO3 is found in secondary acute leukemias. Translocation t(6;11)(q21;q23) with MLL/HRX.
SIMILARITY: Contains 1 fork-head DNA-binding domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/AF6q21ID125.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FOXO3
Diseases sorted by gene-association score: rhabdomyosarcoma (11), cervix carcinoma (7), lung cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 24.64 RPKM in Artery - Tibial
Total median expression: 680.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -153.50292-0.526 Picture PostScript Text
3' UTR -1453.304982-0.292 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001766 - TF_fork_head
IPR018122 - TF_fork_head_CS
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00250 - Forkhead domain
PF16675 - KIX-binding domain of forkhead box O, CR2
PF16676 - Transactivation domain of FOXO protein family

SCOP Domains:
46785 - "Winged helix" DNA-binding domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2K86 - NMR MuPIT 2LQH - NMR MuPIT 2LQI - NMR MuPIT 2UZK - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O43524
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001047 core promoter binding
GO:0001221 transcription cofactor binding
GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008013 beta-catenin binding
GO:0019901 protein kinase binding
GO:0031490 chromatin DNA binding
GO:0034246 mitochondrial RNA polymerase binding promoter specificity activity
GO:0043565 sequence-specific DNA binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001542 ovulation from ovarian follicle
GO:0001544 initiation of primordial ovarian follicle growth
GO:0001547 antral ovarian follicle growth
GO:0001556 oocyte maturation
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0006390 transcription from mitochondrial promoter
GO:0006417 regulation of translation
GO:0006915 apoptotic process
GO:0007568 aging
GO:0009653 anatomical structure morphogenesis
GO:0019221 cytokine-mediated signaling pathway
GO:0030330 DNA damage response, signal transduction by p53 class mediator
GO:0031667 response to nutrient levels
GO:0033209 tumor necrosis factor-mediated signaling pathway
GO:0034599 cellular response to oxidative stress
GO:0042493 response to drug
GO:0042593 glucose homeostasis
GO:0043065 positive regulation of apoptotic process
GO:0043525 positive regulation of neuron apoptotic process
GO:0045648 positive regulation of erythrocyte differentiation
GO:0045665 negative regulation of neuron differentiation
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048854 brain morphogenesis
GO:0071333 cellular response to glucose stimulus
GO:0071386 cellular response to corticosterone stimulus
GO:0071456 cellular response to hypoxia
GO:0071548 response to dexamethasone
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:0097150 neuronal stem cell population maintenance
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand
GO:1901300 positive regulation of hydrogen peroxide-mediated programmed cell death
GO:1903428 positive regulation of reactive oxygen species biosynthetic process
GO:1904646 cellular response to beta-amyloid
GO:1990090 cellular response to nerve growth factor stimulus
GO:1990785 response to water-immersion restraint stress
GO:2000177 regulation of neural precursor cell proliferation
GO:2000353 positive regulation of endothelial cell apoptotic process
GO:2000377 regulation of reactive oxygen species metabolic process

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005759 mitochondrial matrix
GO:0005829 cytosol
GO:0016020 membrane
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  JB406699 - Sequence 25 from Patent WO2012072685.
LP896400 - Sequence 1264 from Patent EP3253886.
BC020227 - Homo sapiens forkhead box O3, mRNA (cDNA clone MGC:31925 IMAGE:4111403), complete cds.
BC021224 - Homo sapiens forkhead box O3, mRNA (cDNA clone MGC:12739 IMAGE:4137370), complete cds.
AF032886 - Homo sapiens forkhead protein (FKHRL1) mRNA, complete cds.
BC068552 - Homo sapiens forkhead box O3, mRNA (cDNA clone MGC:87459 IMAGE:30347471), complete cds.
JB406698 - Sequence 24 from Patent WO2012072685.
AK092357 - Homo sapiens cDNA FLJ35038 fis, clone OCBBF2016841, highly similar to FORKHEAD PROTEIN O3A.
AJ001589 - Homo sapiens mRNA for fork head protein.
AK122861 - Homo sapiens cDNA FLJ16486 fis, clone BRTHA3007532, moderately similar to Forkhead box protein O3A.
CU676878 - Synthetic construct Homo sapiens gateway clone IMAGE:100023385 5' read FOXO3 mRNA.
AB591039 - Synthetic construct DNA, clone: pFN21AB7063, Homo sapiens FOXO3 gene for forkhead box O3, without stop codon, in Flexi system.
KJ891183 - Synthetic construct Homo sapiens clone ccsbBroadEn_00577 FOXO3 gene, encodes complete protein.
AK311587 - Homo sapiens cDNA, FLJ18629.
AK303933 - Homo sapiens cDNA FLJ52830 complete cds, highly similar to Forkhead box protein O3A.
JD137057 - Sequence 118081 from Patent EP1572962.
JD137058 - Sequence 118082 from Patent EP1572962.
JD500445 - Sequence 481469 from Patent EP1572962.
JD555872 - Sequence 536896 from Patent EP1572962.
JD401746 - Sequence 382770 from Patent EP1572962.
JD474989 - Sequence 456013 from Patent EP1572962.
JD339371 - Sequence 320395 from Patent EP1572962.
JD154055 - Sequence 135079 from Patent EP1572962.
JD462600 - Sequence 443624 from Patent EP1572962.
JD178134 - Sequence 159158 from Patent EP1572962.
JD309120 - Sequence 290144 from Patent EP1572962.
CR749261 - Homo sapiens mRNA; cDNA DKFZp781A0677 (from clone DKFZp781A0677).
AK301304 - Homo sapiens cDNA FLJ53219 complete cds, highly similar to Forkhead box protein O3A.
AF041336 - Homo sapiens fork head-like protein (FKHRL1P2) mRNA, complete cds.
JD072505 - Sequence 53529 from Patent EP1572962.
JD119239 - Sequence 100263 from Patent EP1572962.
JD341147 - Sequence 322171 from Patent EP1572962.
JD084286 - Sequence 65310 from Patent EP1572962.
JD131242 - Sequence 112266 from Patent EP1572962.
JD301783 - Sequence 282807 from Patent EP1572962.
AB072905 - Homo sapiens primary neuroblastoma cDNA, clone:Nbla12092.
AK024103 - Homo sapiens cDNA FLJ14041 fis, clone HEMBA1005780.
BC045800 - Homo sapiens cDNA clone IMAGE:4814010.
DQ572881 - Homo sapiens piRNA piR-40993, complete sequence.
JD175731 - Sequence 156755 from Patent EP1572962.
JD205223 - Sequence 186247 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_achPathway - Role of nicotinic acetylcholine receptors in the regulation of apoptosis
h_ptenPathway - PTEN dependent cell cycle arrest and apoptosis
h_longevityPathway - The IGF-1 Receptor and Longevity
h_aktPathway - AKT Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein O43524 (Reactome details) participates in the following event(s):

R-HSA-1535903 Phospho R-SMAD(SMAD2/3):CO-SMAD(SMAD4):FOXO3 binds FoxO3a-binding elements
R-HSA-8952226 RUNX3 binds the BCL2L11 (BIM) gene
R-HSA-5687095 p-S215 FOXO3 binds MIR34B and C gene
R-HSA-5687101 p-T182 MAPKAPK5 phosphorylates FOXO3
R-HSA-8870558 CDK5:p25 phosphorylates FOXO3
R-NUL-8870566 Cdk5:p25 phosphorylates FOXO3
R-HSA-8870628 Phosphorylated FOXO3 translocates to the nucleus
R-HSA-199299 AKT can phosphorylate forkhead box transcription factors
R-HSA-2399992 AKT1 E17K mutant phosphorylates forkhead box transcription factors
R-HSA-1181150 Signaling by NODAL
R-HSA-8952158 RUNX3 regulates BCL2L11 (BIM) transcription
R-HSA-5687128 MAPK6/MAPK4 signaling
R-HSA-8862803 Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models
R-HSA-198693 AKT phosphorylates targets in the nucleus
R-HSA-5674400 Constitutive Signaling by AKT1 E17K in Cancer
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-1266738 Developmental Biology
R-HSA-8878159 Transcriptional regulation by RUNX3
R-HSA-5683057 MAPK family signaling cascades
R-HSA-8863678 Neurodegenerative Diseases
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-2219528 PI3K/AKT Signaling in Cancer
R-HSA-449147 Signaling by Interleukins
R-HSA-212436 Generic Transcription Pathway
R-HSA-162582 Signal Transduction
R-HSA-1643685 Disease
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-5663202 Diseases of signal transduction
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-168256 Immune System
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B4DVZ6, E1P5E6, ENST00000406360.1, FKHRL1 , FOXO3 , FOXO3A , FOXO3_HUMAN, NM_001455, O15171, O43524, Q5T2I7, Q9BZ04, uc319dku.1, uc319dku.2
UCSC ID: ENST00000406360.2_5
RefSeq Accession: NM_001455.4
Protein: O43524 (aka FOXO3_HUMAN or FXO3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.