Human Gene FZD7 (ENST00000286201.3_4) from GENCODE V47lift37
  Description: frizzled class receptor 7 (from RefSeq NM_003507.2)
Gencode Transcript: ENST00000286201.3_4
Gencode Gene: ENSG00000155760.3_5
Transcript (Including UTRs)
   Position: hg19 chr2:202,898,578-202,903,164 Size: 4,587 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr2:202,899,371-202,901,095 Size: 1,725 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:202,898,578-202,903,164)mRNA (may differ from genome)Protein (574 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FZD7_HUMAN
DESCRIPTION: RecName: Full=Frizzled-7; Short=Fz-7; Short=hFz7; AltName: Full=FzE3; Flags: Precursor;
FUNCTION: Receptor for Wnt proteins. Most of frizzled receptors are coupled to the beta-catenin canonical signaling pathway, which leads to the activation of disheveled proteins, inhibition of GSK- 3 kinase, nuclear accumulation of beta-catenin and activation of Wnt target genes. A second signaling pathway involving PKC and calcium fluxes has been seen for some family members, but it is not yet clear if it represents a distinct pathway or if it can be integrated in the canonical pathway, as PKC seems to be required for Wnt-mediated inactivation of GSK-3 kinase. Both pathways seem to involve interactions with G-proteins. May be involved in transduction and intercellular transmission of polarity information during tissue morphogenesis and/or in differentiated tissues.
SUBUNIT: Interacts with MAGI3 and DVL1 (By similarity).
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (By similarity). Cell membrane; Multi-pass membrane protein (By similarity).
TISSUE SPECIFICITY: High expression in adult skeletal muscle and fetal kidney, followed by fetal lung, adult heart, brain, and placenta. Specifically expressed in squamous cell esophageal carcinomas.
DOMAIN: Lys-Thr-X-X-X-Trp motif interacts with the PDZ doman of Dvl (Disheveled) family members and is involved in the activation of the Wnt/beta-catenin signaling pathway (By similarity).
DOMAIN: The FZ domain is involved in binding with Wnt ligands (By similarity).
PTM: Ubiquitinated by ZNRF3, leading to its degradation by the proteasome (By similarity).
SIMILARITY: Belongs to the G-protein coupled receptor Fz/Smo family.
SIMILARITY: Contains 1 FZ (frizzled) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FZD7
Diseases sorted by gene-association score: hepatocellular carcinoma (2), exudative vitreoretinopathy (2), colorectal cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 32.01 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 407.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -463.20793-0.584 Picture PostScript Text
3' UTR -611.202069-0.295 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000539 - Frizzled
IPR015526 - Frizzled/SFRP
IPR020067 - Frizzled_dom
IPR026552 - FZD7
IPR017981 - GPCR_2-like

Pfam Domains:
PF01392 - Fz domain
PF01534 - Frizzled/Smoothened family membrane region

SCOP Domains:
63501 - Frizzled cysteine-rich domain

ModBase Predicted Comparative 3D Structure on O75084
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004888 transmembrane signaling receptor activity
GO:0004930 G-protein coupled receptor activity
GO:0005109 frizzled binding
GO:0005515 protein binding
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding
GO:0017147 Wnt-protein binding
GO:0030165 PDZ domain binding
GO:0042813 Wnt-activated receptor activity

Biological Process:
GO:0006355 regulation of transcription, DNA-templated
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007275 multicellular organism development
GO:0010812 negative regulation of cell-substrate adhesion
GO:0014834 skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration
GO:0016055 Wnt signaling pathway
GO:0019827 stem cell population maintenance
GO:0030182 neuron differentiation
GO:0033077 T cell differentiation in thymus
GO:0034446 substrate adhesion-dependent cell spreading
GO:0035567 non-canonical Wnt signaling pathway
GO:0038031 non-canonical Wnt signaling pathway via JNK cascade
GO:0042327 positive regulation of phosphorylation
GO:0042666 negative regulation of ectodermal cell fate specification
GO:0045893 positive regulation of transcription, DNA-templated
GO:0046330 positive regulation of JNK cascade
GO:0048103 somatic stem cell division
GO:0060054 positive regulation of epithelial cell proliferation involved in wound healing
GO:0060070 canonical Wnt signaling pathway
GO:0060071 Wnt signaling pathway, planar cell polarity pathway
GO:0060231 mesenchymal to epithelial transition
GO:0060828 regulation of canonical Wnt signaling pathway
GO:0071300 cellular response to retinoic acid
GO:2000726 negative regulation of cardiac muscle cell differentiation

Cellular Component:
GO:0005768 endosome
GO:0005886 plasma membrane
GO:0010008 endosome membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0055038 recycling endosome membrane


-  Descriptions from all associated GenBank mRNAs
  AB017365 - Homo sapiens mRNA for frizzled-7, complete cds.
AB010881 - Homo sapiens mRNA for FzE3, complete cds.
BC015915 - Homo sapiens frizzled homolog 7 (Drosophila), mRNA (cDNA clone MGC:20119 IMAGE:4549389), complete cds.
CU677505 - Synthetic construct Homo sapiens gateway clone IMAGE:100019896 5' read FZD7 mRNA.
JF432234 - Synthetic construct Homo sapiens clone IMAGE:100073400 frizzled homolog 7 (Drosophila) (FZD7) gene, encodes complete protein.
KJ892496 - Synthetic construct Homo sapiens clone ccsbBroadEn_01890 FZD7 gene, encodes complete protein.
JC506688 - Sequence 56 from Patent EP2733220.
JC737800 - Sequence 56 from Patent WO2014075939.
JC506666 - Sequence 34 from Patent EP2733220.
JC737778 - Sequence 34 from Patent WO2014075939.
JC506661 - Sequence 29 from Patent EP2733220.
JC737773 - Sequence 29 from Patent WO2014075939.
JC506674 - Sequence 42 from Patent EP2733220.
JC737786 - Sequence 42 from Patent WO2014075939.
JD420853 - Sequence 401877 from Patent EP1572962.
JD266289 - Sequence 247313 from Patent EP1572962.
JD442240 - Sequence 423264 from Patent EP1572962.
JD064798 - Sequence 45822 from Patent EP1572962.
JD176803 - Sequence 157827 from Patent EP1572962.
JD067722 - Sequence 48746 from Patent EP1572962.
JD451960 - Sequence 432984 from Patent EP1572962.
JD099193 - Sequence 80217 from Patent EP1572962.
JD186694 - Sequence 167718 from Patent EP1572962.
JD137153 - Sequence 118177 from Patent EP1572962.
JD400400 - Sequence 381424 from Patent EP1572962.
JD218839 - Sequence 199863 from Patent EP1572962.
JD436144 - Sequence 417168 from Patent EP1572962.
JD043252 - Sequence 24276 from Patent EP1572962.
JD330430 - Sequence 311454 from Patent EP1572962.
JD530847 - Sequence 511871 from Patent EP1572962.
JD489773 - Sequence 470797 from Patent EP1572962.
JD329404 - Sequence 310428 from Patent EP1572962.
JD125505 - Sequence 106529 from Patent EP1572962.
JD078294 - Sequence 59318 from Patent EP1572962.
JD426187 - Sequence 407211 from Patent EP1572962.
JD150379 - Sequence 131403 from Patent EP1572962.
JD399542 - Sequence 380566 from Patent EP1572962.
LQ283614 - Sequence 71 from Patent WO2016034611.
JD379009 - Sequence 360033 from Patent EP1572962.
JD300359 - Sequence 281383 from Patent EP1572962.
JD202627 - Sequence 183651 from Patent EP1572962.
JD495007 - Sequence 476031 from Patent EP1572962.
JD357671 - Sequence 338695 from Patent EP1572962.
JD342744 - Sequence 323768 from Patent EP1572962.
AL110146 - Homo sapiens mRNA; cDNA DKFZp586B0224 (from clone DKFZp586B0224).
JD055899 - Sequence 36923 from Patent EP1572962.
JD348438 - Sequence 329462 from Patent EP1572962.
JD221307 - Sequence 202331 from Patent EP1572962.
JD403926 - Sequence 384950 from Patent EP1572962.
JD048362 - Sequence 29386 from Patent EP1572962.
JD146872 - Sequence 127896 from Patent EP1572962.
JD137147 - Sequence 118171 from Patent EP1572962.
JD250883 - Sequence 231907 from Patent EP1572962.
JD276587 - Sequence 257611 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O75084 (Reactome details) participates in the following event(s):

R-NUL-1504194 mDvl1 binds FZD7
R-HSA-201708 Frizzled receptors bind Wnts
R-HSA-3858491 WNTs bind the FZD receptor to initiate PCP pathway
R-HSA-5099886 WNT5A binding to FZD promotes PRICKLE1 degradation
R-HSA-3858482 DVL is recruited to the receptor
R-HSA-3858480 WNT-dependent phosphorylation of DVL
R-HSA-373080 Class B/2 (Secretin family receptors)
R-HSA-4086400 PCP/CE pathway
R-HSA-4608870 Asymmetric localization of PCP proteins
R-HSA-500792 GPCR ligand binding
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-372790 Signaling by GPCR
R-HSA-195721 Signaling by WNT
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000286201.1, ENST00000286201.2, FZD7_HUMAN, NM_003507, O75084, O94816, Q53S59, Q96B74, uc317kjl.1, uc317kjl.2
UCSC ID: ENST00000286201.3_4
RefSeq Accession: NM_003507.2
Protein: O75084 (aka FZD7_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.