Human Gene FZD8 (ENST00000374694.3_7) from GENCODE V47lift37
  Description: frizzled class receptor 8 (from RefSeq NM_031866.3)
Gencode Transcript: ENST00000374694.3_7
Gencode Gene: ENSG00000177283.8_10
Transcript (Including UTRs)
   Position: hg19 chr10:35,927,175-35,931,224 Size: 4,050 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr10:35,928,273-35,930,357 Size: 2,085 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:35,927,175-35,931,224)mRNA (may differ from genome)Protein (694 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FZD8_HUMAN
DESCRIPTION: RecName: Full=Frizzled-8; Short=Fz-8; Short=hFz8; Flags: Precursor;
FUNCTION: Receptor for Wnt proteins. Component of the Wnt-Fzd- LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome- sized signalosomes. The beta-catenin canonical signaling pathway leads to the activation of disheveled proteins, inhibition of GSK- 3 kinase, nuclear accumulation of beta-catenin and activation of Wnt target genes. A second signaling pathway involving PKC and calcium fluxes has been seen for some family members, but it is not yet clear if it represents a distinct pathway or if it can be integrated in the canonical pathway, as PKC seems to be required for Wnt-mediated inactivation of GSK-3 kinase. Both pathways seem to involve interactions with G-proteins. May be involved in transduction and intercellular transmission of polarity information during tissue morphogenesis and/or in differentiated tissues. Coreceptor along with RYK of Wnt proteins, such as WNT1.
SUBUNIT: Component of a Wnt-signaling complex that contains a WNT protein, a FZD protein and LRP5 or LRP6. Interacts directly with LRP5 or LRP6; the interaction is promoted by Wnt-binding and signaling and inhibited by DKK1. Interacts with GPOC, RSPO1 and RSPO3 (By similarity).
INTERACTION: P98086:C1qa (xeno); NbExp=3; IntAct=EBI-6254212, EBI-6171723; P56704:WNT3A; NbExp=2; IntAct=EBI-6254212, EBI-6173037;
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein. Golgi apparatus (By similarity). Cell membrane; Multi-pass membrane protein (By similarity). Note=Colocalizes with GOPC at the Golgi apparatus (By similarity).
TISSUE SPECIFICITY: Most abundant in fetal kidney, followed by brain and lung. In adult tissues, expressed in kidney, heart, pancreas and skeletal muscle.
DOMAIN: The PDZ-binding motif mediates interaction with GOPC (By similarity).
DOMAIN: Lys-Thr-X-X-X-Trp motif interacts with the PDZ doman of Dvl (Disheveled) family members and is involved in the activation of the Wnt/beta-catenin signaling pathway (By similarity).
DOMAIN: The FZ domain is involved in binding with Wnt ligands (By similarity).
PTM: Ubiquitinated by ZNRF3, leading to its degradation by the proteasome.
SIMILARITY: Belongs to the G-protein coupled receptor Fz/Smo family.
SIMILARITY: Contains 1 FZ (frizzled) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FZD8
Diseases sorted by gene-association score: cystitis (3), split-hand/foot malformation 6 (3), exudative vitreoretinopathy (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.26 RPKM in Spleen
Total median expression: 158.90 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -489.70867-0.565 Picture PostScript Text
3' UTR -339.301098-0.309 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000539 - Frizzled
IPR015526 - Frizzled/SFRP
IPR020067 - Frizzled_dom
IPR026545 - FZD8
IPR017981 - GPCR_2-like

Pfam Domains:
PF01392 - Fz domain
PF01534 - Frizzled/Smoothened family membrane region

SCOP Domains:
63501 - Frizzled cysteine-rich domain

ModBase Predicted Comparative 3D Structure on Q9H461
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004888 transmembrane signaling receptor activity
GO:0004930 G-protein coupled receptor activity
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0017147 Wnt-protein binding
GO:0030165 PDZ domain binding
GO:0031625 ubiquitin protein ligase binding
GO:0042813 Wnt-activated receptor activity

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001525 angiogenesis
GO:0001934 positive regulation of protein phosphorylation
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007275 multicellular organism development
GO:0016055 Wnt signaling pathway
GO:0030182 neuron differentiation
GO:0033077 T cell differentiation in thymus
GO:0035567 non-canonical Wnt signaling pathway
GO:0043507 positive regulation of JUN kinase activity
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0060070 canonical Wnt signaling pathway

Cellular Component:
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:1990851 Wnt-Frizzled-LRP5/6 complex


-  Descriptions from all associated GenBank mRNAs
  AB043703 - Homo sapiens FZD8 mRNA for seven-transmembrane receptor Frizzled-8, complete cds.
JD044783 - Sequence 25807 from Patent EP1572962.
JD355304 - Sequence 336328 from Patent EP1572962.
JD092244 - Sequence 73268 from Patent EP1572962.
JD320503 - Sequence 301527 from Patent EP1572962.
AF086500 - Homo sapiens full length insert cDNA clone ZD99A05.
JD065985 - Sequence 47009 from Patent EP1572962.
JD204442 - Sequence 185466 from Patent EP1572962.
JD327150 - Sequence 308174 from Patent EP1572962.
JD416794 - Sequence 397818 from Patent EP1572962.
JD174023 - Sequence 155047 from Patent EP1572962.
JD510309 - Sequence 491333 from Patent EP1572962.
JD089246 - Sequence 70270 from Patent EP1572962.
JD481780 - Sequence 462804 from Patent EP1572962.
JD542115 - Sequence 523139 from Patent EP1572962.
AB587328 - Synthetic construct DNA, clone: pF1KB7201, Homo sapiens FZD8 gene for frizzled homolog 8, without stop codon, in Flexi system.
BC111845 - Synthetic construct Homo sapiens clone IMAGE:40080850, MGC:133404 FZD8 protein (FZD8) mRNA, encodes complete protein.
JD458642 - Sequence 439666 from Patent EP1572962.
DQ577917 - Homo sapiens piRNA piR-46029, complete sequence.
HZ409488 - JP 2015528002-A/2085: CHIRAL CONTROL.
LG052822 - KR 1020150036642-A/2088: CHIRAL CONTROL.
FR772937 - Homo sapiens microRNA hsa-miR-4683-3p.
HZ083248 - JP 2015513906-A/605: Stem Cell Microparticles.
HZ437029 - JP 2015529450-A/605: Stem Cell Microparticles.
HZ481814 - JP 2015535430-A/2320: TERMINALLY MODIFIED RNA.
HZ791745 - JP 2016504050-A/3490: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
JC172233 - Sequence 605 from Patent WO2013150303.
JC514477 - Sequence 4730 from Patent WO2014113089.
JC573044 - Sequence 605 from Patent WO2014125276.
JC582732 - Sequence 605 from Patent WO2014125277.
JE954428 - Sequence 605 from Patent WO2015052526.
JE956181 - Sequence 605 from Patent WO2015052527.
LF137933 - JP 2016507550-A/605: Method of Producing Microparticles.
LF161609 - JP 2016513950-A/1675: Oligomers with improved off-target profile.
LF162898 - JP 2016513095-A/605: Stem Cell Microparticles and miRNA.
LF953650 - JP 2016534103-A/605: Stem Cell Microparticles and miRNA.
LG005995 - KR 1020150004822-A/605: STEM CELL MICROPARTICLES.
LG053691 - KR 1020150059168-A/605: STEM CELL MICROPARTICLES.
LG240930 - KR 1020160035087-A/605: STEM CELL MICROPARTICLES AND MIRNA.
LQ072065 - Sequence 2389 from Patent EP2964234.
LV471015 - JP 2016534036-A/605: Stem Cell Microparticles and miRNA.
MA645566 - JP 2017113010-A/3490: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
MA733450 - JP 2017140048-A/2320: TERMINALLY MODIFIED RNA.
MA405820 - WO 2018155427-A/594: A probe with reduced false positive binding, a method to desing the probe, and the use thereof.
MA802619 - JP 2018183181-A/3490: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
MP129705 - Sequence 605 from Patent EP3470073.
MP162628 - Sequence 605 from Patent WO2019069093.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9H461 (Reactome details) participates in the following event(s):

R-HSA-201708 Frizzled receptors bind Wnts
R-HSA-5099886 WNT5A binding to FZD promotes PRICKLE1 degradation
R-HSA-4641249 ZNRF3,RNF43 binds the FZD:LRP5/6 receptor complex
R-HSA-4641236 USP8 deubiquitinates FZD to potentiate WNT signaling
R-HSA-4641253 ZNRF3 ubiquitinates FZD to promote its downregulation
R-HSA-373080 Class B/2 (Secretin family receptors)
R-HSA-4608870 Asymmetric localization of PCP proteins
R-HSA-500792 GPCR ligand binding
R-HSA-4641263 Regulation of FZD by ubiquitination
R-HSA-5340588 RNF mutants show enhanced WNT signaling and proliferation
R-HSA-4086400 PCP/CE pathway
R-HSA-372790 Signaling by GPCR
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-4791275 Signaling by WNT in cancer
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-162582 Signal Transduction
R-HSA-195721 Signaling by WNT
R-HSA-5663202 Diseases of signal transduction
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000374694.1, ENST00000374694.2, FZD8_HUMAN, NM_031866, Q9H461, uc318ltm.1, uc318ltm.2
UCSC ID: ENST00000374694.3_7
RefSeq Accession: NM_031866.3
Protein: Q9H461 (aka FZD8_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.