Human Gene GJA1 (ENST00000282561.4_5) from GENCODE V47lift37
  Description: gap junction protein alpha 1 (from RefSeq NM_000165.5)
Gencode Transcript: ENST00000282561.4_5
Gencode Gene: ENSG00000152661.9_12
Transcript (Including UTRs)
   Position: hg19 chr6:121,756,792-121,770,873 Size: 14,082 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr6:121,767,994-121,769,142 Size: 1,149 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:121,756,792-121,770,873)mRNA (may differ from genome)Protein (382 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CXA1_HUMAN
DESCRIPTION: RecName: Full=Gap junction alpha-1 protein; AltName: Full=Connexin-43; Short=Cx43; AltName: Full=Gap junction 43 kDa heart protein;
FUNCTION: Gap junction protein that acts as a regulator of bladder capacity. A gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. May play a critical role in the physiology of hearing by participating in the recycling of potassium to the cochlear endolymph. Negative regulator of bladder functional capacity: acts by enhancing intercellular electrical and chemical transmission, thus sensitizing bladder muscles to cholinergic neural stimuli and causing them to contract (By similarity).
SUBUNIT: A connexon is composed of a hexamer of connexins. Interacts (via C-terminus) with TJP1. Interacts (via C-terminus) with SRC (via SH3 domain). Interacts with UBQLN4 (By similarity). Interacts with SGSM3. Interacts with KIAA1432/CIP150. Interacts with CNST and CSNK1D.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein. Cell junction, gap junction.
TISSUE SPECIFICITY: Expressed in the heart and fetal cochlea.
PTM: Phosphorylated at Ser-368 by PRKCG; phosphorylation induces disassembly of gap junction plaques and inhibition of gap junction activity (By similarity). Phosphorylation at Ser-325, Ser-328 and Ser-330 by CK1 modulates gap junction assembly.
PTM: Sumoylated with SUMO1, SUMO2 and SUMO3, which may regulate the level of functional Cx43 gap junctions at the plasma membrane. May be desumoylated by SENP1 or SENP2.
DISEASE: Defects in GJA1 are the cause of oculodentodigital dysplasia (ODDD) [MIM:164200]; also known as oculodentoosseous dysplasia. ODDD is a highly penetrant syndrome presenting with craniofacial (ocular, nasal, dental) and limb dysmorphisms, spastic paraplegia, and neurodegeneration. Craniofacial anomalies tipically include a thin nose with hypoplastic alae nasi, small anteverted nares, prominent columnella, and microcephaly. Brittle nails and hair abnormalities of hypotrichosis and slow growth are present. Ocular defects include microphthalmia, microcornea, cataracts, glaucoma, and optic atrophy. Syndactyly type 3 and conductive deafness can occur in some cases. Cardiac abnormalities are observed in rare instances.
DISEASE: Defects in GJA1 are the cause of oculodentodigital dysplasia, autosomal recessive (ODDD-AR) [MIM:257850].
DISEASE: Defects in GJA1 may be the cause of syndactyly type 3 (SDTY3) [MIM:186100]. Syndactyly is an autosomal dominant trait and is the most common congenital anomaly of the hand or foot. It is marked by persistence of the webbing between adjacent digits, so they are more or less completely attached. In this type there is usually complete and bilateral syndactyly between the fourth and fifth fingers. Usually it is soft tissue syndactyly but occasionally the distal phalanges are fused. The fifth finger is short with absent or rudimentary middle phalanx. The feet are not affected.
DISEASE: Defects in GJA1 are a cause of hypoplastic left heart syndrome type 1 (HLHS1) [MIM:241550]. A syndrome due to defective development of the aorta proximal to the entrance of the ductus arteriosus, and hypoplasia of the left ventricle and mitral valve. As a result of the abnormal circulation, the ductus arteriosus and foramen ovale are patent and the right atrium, right ventricle, and pulmonary artery are enlarged.
DISEASE: Defects in GJA1 are a cause of Hallermann-Streiff syndrome (HSS) [MIM:234100]. HSS is a disorder characterized by a typical skull shape (brachycephaly with frontal bossing), hypotrichosis, microphthalmia, cataracts, beaked nose, micrognathia, skin atrophy, dental anomalies and proportionate short stature. Mental retardation is present in a minority of cases.
DISEASE: Defects in GJA1 are a cause of atrioventricular septal defect type 3 (AVSD3) [MIM:600309]. A congenital heart malformation characterized by a common atrioventricular junction coexisting with deficient atrioventricular septation. The complete form involves underdevelopment of the lower part of the atrial septum and the upper part of the ventricular septum. A less severe form, known as ostium primum atrial septal defect, has a deficiency of the atrial septum.
SIMILARITY: Belongs to the connexin family. Alpha-type (group II) subfamily.
CAUTION: PubMed:7715640 reported a mutation Pro-364 linked to congenital heart diseases. PubMed:8873667 later shown that it is an artifact.
CAUTION: PubMed:11741837 reported 2 mutations (Phe-11 and Ala-24) linked to non-syndromic autosomal recessive deafness (DFNBG). These mutations have subsequently been shown (PubMed:12457340) to involve the pseudogene of connexin-43 located on chromosome 5.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/GJA1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GJA1
Diseases sorted by gene-association score: oculodentodigital dysplasia* (1745), syndactyly, type iii* (1679), palmoplantar keratoderma with congenital alopecia* (1550), craniometaphyseal dysplasia, autosomal recessive* (1329), hypoplastic left heart syndrome 1* (1030), atrioventricular septal defect 3* (1030), oculodentodigital dysplasia, autosomal recessive* (930), erythrokeratodermia variabilis et progressiva 3* (900), craniometaphyseal dysplasia* (568), erythrokeratodermia variabilis et progressiva 1* (384), hallermann-streiff syndrome* (334), alacrima, achalasia, and mental retardation syndrome* (71), intellectual disability* (69), hypoplastic left heart syndrome* (49), anomalous left coronary artery from the pulmonary artery (23), criss-cross heart (18), ischemia (17), atrioventricular septal defect (13), keratitis-ichthyosis-deafness syndrome (13), leukonychia totalis (13), chromosome 2q35 duplication syndrome (12), arrhythmogenic right ventricular cardiomyopathy (11), pseudoainhum (10), alopecia (9), skin atrophy (8), hypotrichosis (8), cardiomyopathy, dilated, 1o (8), ainhum (7), diabetic foot ulcers (7), heart disease (7), limbal stem cell deficiency (7), pelizaeus-merzbacher-like disease (6), bart-pumphrey syndrome (6), axenfeld-rieger syndrome (6), ectodermal dysplasia 2, clouston type (6), tetralogy of fallot (6), hypomyelinating leukoencephalopathy (5), sinoatrial node disease (5), spinocerebellar ataxia 14 (5), dentin sensitivity (4), cardiomyopathy, dilated, 1e (4), tricuspid valve stenosis (4), atrial fibrillation (4), autosomal recessive non-syndromic sensorineural deafness type dfnb* (3), malignant glioma (3), ventricular tachycardia, catecholaminergic polymorphic, 1 (3), skin disease (2), cardiomyopathy (2), dilated cardiomyopathy (2), nonsyndromic deafness (2), myocardial infarction (2), heart conduction disease (1), gliosarcoma (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 250.94 RPKM in Adrenal Gland
Total median expression: 3395.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.40203-0.238 Picture PostScript Text
3' UTR -413.101731-0.239 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000500 - Connexin
IPR002261 - Connexin43
IPR013124 - Connexin43_C
IPR019570 - Connexin_CCC
IPR017990 - Connexin_CS
IPR013092 - Connexin_N

Pfam Domains:
PF00029 - Connexin
PF03508 - Gap junction alpha-1 protein (Cx43)

SCOP Domains:
111352 - Ammonium transporter
118220 - Connexin43

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2LL2 - NMR


ModBase Predicted Comparative 3D Structure on P17302
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005102 receptor binding
GO:0005243 gap junction channel activity
GO:0005515 protein binding
GO:0015075 ion transmembrane transporter activity
GO:0017124 SH3 domain binding
GO:0019904 protein domain specific binding
GO:0022857 transmembrane transporter activity
GO:0030165 PDZ domain binding
GO:0048487 beta-tubulin binding
GO:0071253 connexin binding
GO:0086075 gap junction channel activity involved in cardiac conduction electrical coupling
GO:0097110 scaffold protein binding
GO:0097718 disordered domain specific binding
GO:1903763 gap junction channel activity involved in cell communication by electrical coupling
GO:1990782 protein tyrosine kinase binding

Biological Process:
GO:0001649 osteoblast differentiation
GO:0001701 in utero embryonic development
GO:0001764 neuron migration
GO:0001937 negative regulation of endothelial cell proliferation
GO:0001947 heart looping
GO:0002070 epithelial cell maturation
GO:0002088 lens development in camera-type eye
GO:0002544 chronic inflammatory response
GO:0002931 response to ischemia
GO:0003104 positive regulation of glomerular filtration
GO:0003158 endothelium development
GO:0003294 atrial ventricular junction remodeling
GO:0006915 apoptotic process
GO:0006936 muscle contraction
GO:0007154 cell communication
GO:0007165 signal transduction
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0007267 cell-cell signaling
GO:0007507 heart development
GO:0007512 adult heart development
GO:0008016 regulation of heart contraction
GO:0008285 negative regulation of cell proliferation
GO:0009268 response to pH
GO:0009749 response to glucose
GO:0010232 vascular transport
GO:0010628 positive regulation of gene expression
GO:0010629 negative regulation of gene expression
GO:0010643 cell communication by chemical coupling
GO:0010644 cell communication by electrical coupling
GO:0010652 positive regulation of cell communication by chemical coupling
GO:0015867 ATP transport
GO:0016264 gap junction assembly
GO:0022898 regulation of transmembrane transporter activity
GO:0030308 negative regulation of cell growth
GO:0030500 regulation of bone mineralization
GO:0032024 positive regulation of insulin secretion
GO:0032496 response to lipopolysaccharide
GO:0032526 response to retinoic acid
GO:0034220 ion transmembrane transport
GO:0034405 response to fluid shear stress
GO:0035050 embryonic heart tube development
GO:0042733 embryonic digit morphogenesis
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043403 skeletal muscle tissue regeneration
GO:0043434 response to peptide hormone
GO:0045216 cell-cell junction organization
GO:0045669 positive regulation of osteoblast differentiation
GO:0045732 positive regulation of protein catabolic process
GO:0045844 positive regulation of striated muscle tissue development
GO:0045907 positive regulation of vasoconstriction
GO:0046697 decidualization
GO:0046850 regulation of bone remodeling
GO:0048514 blood vessel morphogenesis
GO:0048812 neuron projection morphogenesis
GO:0051259 protein oligomerization
GO:0051924 regulation of calcium ion transport
GO:0055085 transmembrane transport
GO:0060044 negative regulation of cardiac muscle cell proliferation
GO:0060156 milk ejection reflex
GO:0060307 regulation of ventricular cardiac muscle cell membrane repolarization
GO:0060371 regulation of atrial cardiac muscle cell membrane depolarization
GO:0060373 regulation of ventricular cardiac muscle cell membrane depolarization
GO:0061045 negative regulation of wound healing
GO:0061337 cardiac conduction
GO:0071260 cellular response to mechanical stimulus
GO:0071374 cellular response to parathyroid hormone stimulus
GO:0071467 cellular response to pH
GO:0086014 atrial cardiac muscle cell action potential
GO:0086064 cell communication by electrical coupling involved in cardiac conduction
GO:2000279 negative regulation of DNA biosynthetic process
GO:2000810 regulation of bicellular tight junction assembly
GO:2000987 positive regulation of behavioral fear response

Cellular Component:
GO:0000139 Golgi membrane
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005764 lysosome
GO:0005768 endosome
GO:0005769 early endosome
GO:0005770 late endosome
GO:0005771 multivesicular body
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0005882 intermediate filament
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0005911 cell-cell junction
GO:0005916 fascia adherens
GO:0005921 gap junction
GO:0005922 connexin complex
GO:0005925 focal adhesion
GO:0014704 intercalated disc
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016324 apical plasma membrane
GO:0016328 lateral plasma membrane
GO:0030054 cell junction
GO:0030660 Golgi-associated vesicle membrane
GO:0032991 macromolecular complex
GO:0043231 intracellular membrane-bounded organelle
GO:0043292 contractile fiber
GO:0045121 membrane raft


-  Descriptions from all associated GenBank mRNAs
  HW061161 - JP 2012529430-A/36: METHODS FOR TREATING CHRONIC KIDNEY DISEASE.
JA482116 - Sequence 99 from Patent WO2011072091.
JB251969 - Sequence 36 from Patent EP2440214.
JE980408 - Sequence 99 from Patent EP2862929.
LP764868 - Sequence 36 from Patent EP3276004.
HH837108 - Sequence 35 from Patent EP2231168.
HI214749 - Sequence 35 from Patent EP2076526.
HV601551 - JP 2011500003-A/35: Novel siRNA Structures.
HV856624 - JP 2010507387-A/35: Novel siRNAs and Methods of Use Thereof.
HW165111 - JP 2013102767-A/35: Novel siRNA's and Use Thereof.
HW675619 - JP 2014210789-A/35: Novel siRNA Structures.
HW835307 - JP 2015051004-A/35: Novel siRNA's and Use Thereof.
JA538150 - Sequence 35 from Patent EP2371958.
AK312324 - Homo sapiens cDNA, FLJ92636, Homo sapiens gap junction protein, alpha 1, 43kDa (connexin 43)(GJA1), mRNA.
AK297764 - Homo sapiens cDNA FLJ51901 complete cds, highly similar to Gap junction alpha-1 protein.
AK223289 - Homo sapiens mRNA for connexin 43 variant, clone: SYN08454.
AK294670 - Homo sapiens cDNA FLJ50955 complete cds, highly similar to Gap junction alpha-1 protein.
AK297402 - Homo sapiens cDNA FLJ50990 complete cds, highly similar to Gap junction alpha-1 protein.
AK309377 - Homo sapiens cDNA, FLJ99418.
AK316159 - Homo sapiens cDNA, FLJ79058 complete cds, highly similar to Gap junction alpha-1 protein.
AK295460 - Homo sapiens cDNA FLJ53043 complete cds, highly similar to Gap junction alpha-1 protein.
AK297761 - Homo sapiens cDNA FLJ57333 complete cds, highly similar to Gap junction alpha-1 protein.
AK309490 - Homo sapiens cDNA, FLJ99531.
JA670489 - Sequence 5 from Patent EP2387612.
M65188 - Human connexin 43 (GJA1, Cx43) mRNA, complete cds.
X52947 - Human mRNA for cardiac gap junction protein.
BC026329 - Homo sapiens gap junction protein, alpha 1, 43kDa, mRNA (cDNA clone MGC:26323 IMAGE:4794131), complete cds.
JD433017 - Sequence 414041 from Patent EP1572962.
JD563232 - Sequence 544256 from Patent EP1572962.
JD226090 - Sequence 207114 from Patent EP1572962.
JD196410 - Sequence 177434 from Patent EP1572962.
JD359258 - Sequence 340282 from Patent EP1572962.
CU693216 - Synthetic construct Homo sapiens gateway clone IMAGE:100019169 5' read GJA1 mRNA.
AB464551 - Synthetic construct DNA, clone: pF1KB9852, Homo sapiens GJA1 gene for gap junction protein, alpha 1, 43kDa, without stop codon, in Flexi system.
DQ895611 - Synthetic construct Homo sapiens clone IMAGE:100010071; FLH185943.01L; RZPDo839G12147D gap junction protein, alpha 1, 43kDa (connexin 43) (GJA1) gene, encodes complete protein.
KJ896880 - Synthetic construct Homo sapiens clone ccsbBroadEn_06274 GJA1 gene, encodes complete protein.
KR709453 - Synthetic construct Homo sapiens clone CCSBHm_00002356 GJA1 (GJA1) mRNA, encodes complete protein.
KR709454 - Synthetic construct Homo sapiens clone CCSBHm_00002385 GJA1 (GJA1) mRNA, encodes complete protein.
DQ893649 - Synthetic construct clone IMAGE:100006279; FLH185947.01X; RZPDo839G12148D gap junction protein, alpha 1, 43kDa (connexin 43) (GJA1) gene, encodes complete protein.
CR541660 - Homo sapiens full open reading frame cDNA clone RZPDo834A1127D for gene GJA1, gap junction protein, alpha 1, 43kDa (connexin 43); complete cds, without stopcodon.
JD449035 - Sequence 430059 from Patent EP1572962.
JD108183 - Sequence 89207 from Patent EP1572962.
JD544451 - Sequence 525475 from Patent EP1572962.
JD485900 - Sequence 466924 from Patent EP1572962.
JD223495 - Sequence 204519 from Patent EP1572962.
JD485976 - Sequence 467000 from Patent EP1572962.
JD545018 - Sequence 526042 from Patent EP1572962.
JD222552 - Sequence 203576 from Patent EP1572962.
JD290949 - Sequence 271973 from Patent EP1572962.
JD551358 - Sequence 532382 from Patent EP1572962.
JD551155 - Sequence 532179 from Patent EP1572962.
JD323676 - Sequence 304700 from Patent EP1572962.
JD354663 - Sequence 335687 from Patent EP1572962.
JD263358 - Sequence 244382 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_gsk3Pathway - Inactivation of Gsk3 by AKT causes accumulation of b-catenin in Alveolar Macrophages

Reactome (by CSHL, EBI, and GO)

Protein P17302 (Reactome details) participates in the following event(s):

R-HSA-190662 Connexin oligomerization in Trans-Golgi Network (TGN)
R-HSA-190686 Transport of connexins to the Trans-Golgi Network (TGN)
R-HSA-190877 Insertion of connexons into the plasma membrane resulting in the formation of hemi-channels
R-HSA-190520 Association of Golgi transport vesicles with microtubules
R-HSA-190541 Association of Cx43 with TJP1
R-HSA-190782 Budding of connexon-containing transport vesicles from the Golgi
R-HSA-190788 Formation of junctional channels
R-HSA-191654 c-src associates with Cx43 in gap junctions
R-HSA-191737 Docking of connexons into junctional, double-membrane spanning channels
R-HSA-191636 Phosphorylation of Cx43 by c-src
R-HSA-191656 Closure of gap junction
R-HSA-190790 Assembly of gap junction plaques
R-HSA-196026 Dab2 is recruited to the junctional plaques
R-HSA-196017 Dynamin is recruited to the gap junction plaque
R-HSA-190519 Internalization of gap junction plaques
R-HSA-190704 Oligomerization of connexins into connexons
R-HSA-190827 Transport of connexins along the secretory pathway
R-HSA-190861 Gap junction assembly
R-HSA-190840 Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane
R-HSA-191647 c-src mediated regulation of Cx43 function and closure of gap junctions
R-HSA-190828 Gap junction trafficking
R-HSA-190872 Transport of connexons to the plasma membrane
R-HSA-191650 Regulation of gap junction activity
R-HSA-157858 Gap junction trafficking and regulation
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport
R-HSA-196025 Formation of annular gap junctions
R-HSA-190873 Gap junction degradation

-  Other Names for This Gene
  Alternate Gene Symbols: B2R5U9, CXA1_HUMAN, ENST00000282561.1, ENST00000282561.2, ENST00000282561.3, GJAL, NM_000165, P17302, Q6FHU1, Q9Y5I8, uc317kab.1, uc317kab.2
UCSC ID: ENST00000282561.4_5
RefSeq Accession: NM_000165.5
Protein: P17302 (aka CXA1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.