Human Gene GLS (ENST00000320717.8_7) from GENCODE V47lift37
  Description: glutaminase, transcript variant 1 (from RefSeq NM_014905.5)
Gencode Transcript: ENST00000320717.8_7
Gencode Gene: ENSG00000115419.14_17
Transcript (Including UTRs)
   Position: hg19 chr2:191,745,547-191,830,278 Size: 84,732 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr2:191,745,811-191,827,712 Size: 81,902 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:191,745,547-191,830,278)mRNA (may differ from genome)Protein (669 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GLSK_HUMAN
DESCRIPTION: RecName: Full=Glutaminase kidney isoform, mitochondrial; Short=GLS; EC=3.5.1.2; AltName: Full=K-glutaminase; AltName: Full=L-glutamine amidohydrolase; Flags: Precursor;
FUNCTION: Catalyzes the first reaction in the primary pathway for the renal catabolism of glutamine. Plays a role in maintaining acid-base homeostasis. Regulates the levels of the neurotransmitter glutamate in the brain. Isoform 2 lacks catalytic activity.
CATALYTIC ACTIVITY: L-glutamine + H(2)O = L-glutamate + NH(3).
ENZYME REGULATION: Isoform 1 and isoform 3 are activated by phosphate. Inhibited by BPTES. BPTES binds between subunits and favors dissociation of the tetramer into dimers.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=1.9 mM for glutamine (isoform 1); KM=1.4 mM for glutamine (isoform 3);
SUBUNIT: Heterotetramer. Interacts with ATCAY; the interaction is direct and may control GLS localization, negatively regulating its activity.
SUBCELLULAR LOCATION: Isoform 1: Cytoplasm, cytosol.
SUBCELLULAR LOCATION: Isoform 3: Mitochondrion.
TISSUE SPECIFICITY: Isoform 1 and isoform 3 are detected in brain cortex. Isoform 3 is highly expressed in astrocytoma, ganglioglioma and ependymoma. Isoform 1 is highly expressed in brain and kidney, but not detected in liver. Isoform 3 is highly expressed in heart and pancreas, detected at lower levels in placenta, lung, pancreas and kidney, but is not detected in liver. Isoform 2 is expressed in cardiac and skeletal muscle.
SIMILARITY: Belongs to the glutaminase family.
SIMILARITY: Contains 2 ANK repeats.
CAUTION: Isoform 3 is predicted to be expressed at very low levels due to a premature stop codon in the mRNA, leading to nonsense- mediated mRNA decay (PubMed:14759258), but has been shown to be well expressed (PubMed:17940881 and PubMed:11015561) and the encoded protein is detected in mitochondria (PubMed:22228304).
SEQUENCE CAUTION: Sequence=BAA74861.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GLS
Diseases sorted by gene-association score: acute endometritis (11), hepatic encephalopathy (10), retinitis pigmentosa 20 (9), spinocerebellar ataxia 2 (7), silent myocardial infarction (7), lacrimal gland adenocarcinoma (7), mitral valve insufficiency (5), aortic valve disease 1 (4), aortic valve disease 2 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 47.00 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 653.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -87.60264-0.332 Picture PostScript Text
3' UTR -638.402566-0.249 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom
IPR012338 - Beta-lactam/transpept-like
IPR015868 - Glutaminase

Pfam Domains:
PF00023 - Ankyrin repeat
PF04960 - Glutaminase
PF12796 - Ankyrin repeats (3 copies)
PF13606 - Ankyrin repeat
PF13637 - Ankyrin repeats (many copies)
PF17959 - EF-hand domain

SCOP Domains:
140860 - Pseudo ankyrin repeat-like
48403 - Ankyrin repeat
56601 - beta-lactamase/transpeptidase-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3CZD - X-ray MuPIT 3UNW - X-ray MuPIT 3UO9 - X-ray MuPIT 3VOY - X-ray MuPIT 3VOZ - X-ray MuPIT 3VP0 - X-ray MuPIT 3VP1 - X-ray MuPIT 3VP2 - X-ray MuPIT 3VP3 - X-ray MuPIT 3VP4 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O94925
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004359 glutaminase activity
GO:0005515 protein binding
GO:0016787 hydrolase activity

Biological Process:
GO:0001967 suckling behavior
GO:0002087 regulation of respiratory gaseous exchange by neurological system process
GO:0006537 glutamate biosynthetic process
GO:0006541 glutamine metabolic process
GO:0006543 glutamine catabolic process
GO:0007268 chemical synaptic transmission
GO:0008652 cellular amino acid biosynthetic process
GO:0014047 glutamate secretion
GO:0051289 protein homotetramerization

Cellular Component:
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK289747 - Homo sapiens cDNA FLJ75476 complete cds, highly similar to Homo sapiens glutaminase (GLS), mRNA.
BC038507 - Homo sapiens glutaminase, mRNA (cDNA clone MGC:33744 IMAGE:5263220), complete cds.
AB020645 - Homo sapiens KIAA0838 mRNA for KIAA0838 protein.
AF097495 - Homo sapiens glutaminase isoform M precursor, mRNA, complete cds.
AF327434 - Homo sapiens glutaminase mRNA, complete cds; nuclear gene for mitochondrial product.
AF223943 - Homo sapiens glutaminase kidney isoform mRNA, complete cds.
AB463054 - Synthetic construct DNA, clone: pF1KA0838, Homo sapiens GLS gene for glutaminase, without stop codon, in Flexi system.
AF097492 - Homo sapiens glutaminase isoform C mRNA, complete cds.
AF158555 - Homo sapiens glutaminase C mRNA, complete cds.
Y08264 - H.sapiens mRNA for AAD20 protein, partial.
JD394389 - Sequence 375413 from Patent EP1572962.
JD200322 - Sequence 181346 from Patent EP1572962.
DQ576968 - Homo sapiens piRNA piR-45080, complete sequence.
AF279697 - Homo sapiens glutaminase mRNA, partial cds.
AK001220 - Homo sapiens cDNA FLJ10358 fis, clone NT2RM2001238, highly similar to Glutaminase kidney isoform, mitochondrial precursor (EC 3.5.1.2).
CR749593 - Homo sapiens mRNA; cDNA DKFZp686O15119 (from clone DKFZp686O15119).
AF097493 - Homo sapiens glutaminase kidney isoform mRNA, complete cds.
AK294927 - Homo sapiens cDNA FLJ55168 complete cds, highly similar to Glutaminase kidney isoform, mitochondrial precursor (EC 3.5.1.2).
AK298266 - Homo sapiens cDNA FLJ55236 complete cds, highly similar to Glutaminase kidney isoform, mitochondrial precursor (EC 3.5.1.2).
AK092974 - Homo sapiens cDNA FLJ35655 fis, clone SPLEN2013857, moderately similar to GLUTAMINASE, KIDNEY ISOFORM PRECURSOR (EC 3.5.1.2).
AJ431620 - Homo sapiens mRNA adjacent to 3' end of integrated HPV16 (INT423).
JD426899 - Sequence 407923 from Patent EP1572962.
JD233276 - Sequence 214300 from Patent EP1572962.
JD546193 - Sequence 527217 from Patent EP1572962.
JD298225 - Sequence 279249 from Patent EP1572962.
JD434162 - Sequence 415186 from Patent EP1572962.
JD111044 - Sequence 92068 from Patent EP1572962.
JD158311 - Sequence 139335 from Patent EP1572962.
JD489984 - Sequence 471008 from Patent EP1572962.
JD515045 - Sequence 496069 from Patent EP1572962.
JD037189 - Sequence 18213 from Patent EP1572962.
JD097128 - Sequence 78152 from Patent EP1572962.
JD450752 - Sequence 431776 from Patent EP1572962.
JD557068 - Sequence 538092 from Patent EP1572962.
JD037612 - Sequence 18636 from Patent EP1572962.
JD323373 - Sequence 304397 from Patent EP1572962.
JD150967 - Sequence 131991 from Patent EP1572962.
JD274821 - Sequence 255845 from Patent EP1572962.
JD554388 - Sequence 535412 from Patent EP1572962.
JD310097 - Sequence 291121 from Patent EP1572962.
JD534308 - Sequence 515332 from Patent EP1572962.
JD566560 - Sequence 547584 from Patent EP1572962.
JD200256 - Sequence 181280 from Patent EP1572962.
JD503135 - Sequence 484159 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
GLUTAMINDEG-PWY - L-glutamine degradation
PWY-5921 - glutaminyl-tRNAgln biosynthesis via transamidation

Reactome (by CSHL, EBI, and GO)

Protein O94925 (Reactome details) participates in the following event(s):

R-HSA-70609 glutamine + H2O => glutamate + NH4+ [GLS]
R-HSA-70614 Amino acid synthesis and interconversion (transamination)
R-HSA-210500 Glutamate Neurotransmitter Release Cycle
R-HSA-5628897 TP53 Regulates Metabolic Genes
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-112310 Neurotransmitter release cycle
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-1430728 Metabolism
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-212436 Generic Transcription Pathway
R-HSA-112316 Neuronal System
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000320717.1, ENST00000320717.2, ENST00000320717.3, ENST00000320717.4, ENST00000320717.5, ENST00000320717.6, ENST00000320717.7, GLS1, GLSK_HUMAN, KIAA0838, NM_014905, O94925, Q9UL05, Q9UL06, Q9UL07, Q9UN40, uc317qxx.1, uc317qxx.2
UCSC ID: ENST00000320717.8_7
RefSeq Accession: NM_014905.5
Protein: O94925 (aka GLSK_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.