Human Gene GOLGA2 (ENST00000611957.5_13) from GENCODE V47lift37
  Description: golgin A2, transcript variant 5 (from RefSeq NM_001389696.2)
Gencode Transcript: ENST00000611957.5_13
Gencode Gene: ENSG00000167110.19_18
Transcript (Including UTRs)
   Position: hg19 chr9:131,018,108-131,038,286 Size: 20,179 Total Exon Count: 27 Strand: -
Coding Region
   Position: hg19 chr9:131,019,346-131,038,255 Size: 18,910 Coding Exon Count: 27 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:131,018,108-131,038,286)mRNA (may differ from genome)Protein (1029 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsHGNC
MalacardsMGIPubMedUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GOLGA2
Diseases sorted by gene-association score: deafness, autosomal recessive 9 (7), mucopolysaccharidosis iii (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -6.9031-0.223 Picture PostScript Text
3' UTR -424.501238-0.343 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  BC069268 - Homo sapiens golgi autoantigen, golgin subfamily a, 2, mRNA (cDNA clone MGC:78452 IMAGE:6340972), complete cds.
AY823636 - Homo sapiens Golgi matrix protein GM130 (GOLGA2) mRNA, partial cds.
BX647920 - Homo sapiens mRNA; cDNA DKFZp686K0319 (from clone DKFZp686K0319).
JD401828 - Sequence 382852 from Patent EP1572962.
JD323072 - Sequence 304096 from Patent EP1572962.
JD486895 - Sequence 467919 from Patent EP1572962.
JD426952 - Sequence 407976 from Patent EP1572962.
BC014188 - Homo sapiens golgi autoantigen, golgin subfamily a, 2, mRNA (cDNA clone IMAGE:4644480), partial cds.
JD067987 - Sequence 49011 from Patent EP1572962.
BC006381 - Homo sapiens golgi autoantigen, golgin subfamily a, 2, mRNA (cDNA clone IMAGE:4099938), partial cds.
L06147 - Human (clone SY11) golgin-95 mRNA, complete cds.
JD266384 - Sequence 247408 from Patent EP1572962.
JD449191 - Sequence 430215 from Patent EP1572962.
JD266383 - Sequence 247407 from Patent EP1572962.
JD449190 - Sequence 430214 from Patent EP1572962.
JD171027 - Sequence 152051 from Patent EP1572962.
JD088435 - Sequence 69459 from Patent EP1572962.
JD266383 - Sequence 247407 from Patent EP1572962.
JD266384 - Sequence 247408 from Patent EP1572962.
JD449190 - Sequence 430214 from Patent EP1572962.
JD449191 - Sequence 430215 from Patent EP1572962.
AF248953 - Homo sapiens golgi matrix protein GM130 (GOLGA2) mRNA, complete cds.
KJ901459 - Synthetic construct Homo sapiens clone ccsbBroadEn_10853 GOLGA2 gene, encodes complete protein.
BT007248 - Homo sapiens golgi autoantigen, golgin subfamily a, 2 mRNA, complete cds.
DQ598497 - Homo sapiens piRNA piR-36563, complete sequence.
JD095112 - Sequence 76136 from Patent EP1572962.
JD187637 - Sequence 168661 from Patent EP1572962.
JD183606 - Sequence 164630 from Patent EP1572962.
DL490576 - Novel nucleic acids.
DQ596686 - Homo sapiens piRNA piR-34752, complete sequence.
DQ596685 - Homo sapiens piRNA piR-34751, complete sequence.
DQ583775 - Homo sapiens piRNA piR-50887, complete sequence.
JD216761 - Sequence 197785 from Patent EP1572962.
DQ583787 - Homo sapiens piRNA piR-50899, complete sequence.
JD443155 - Sequence 424179 from Patent EP1572962.
JD443154 - Sequence 424178 from Patent EP1572962.
AK075055 - Homo sapiens cDNA FLJ90574 fis, clone OVARC1001833.
AK129640 - Homo sapiens cDNA FLJ26129 fis, clone TMS02971.
DQ571235 - Homo sapiens piRNA piR-31347, complete sequence.
DQ593480 - Homo sapiens piRNA piR-33592, complete sequence.
CU686726 - Synthetic construct Homo sapiens gateway clone IMAGE:100023175 5' read GOLGA2 mRNA.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A8J9BZL8, A0A8J9BZL8_HUMAN, ENST00000611957.1, ENST00000611957.2, ENST00000611957.3, ENST00000611957.4, GOLGA2 , NM_001389696, uc327nrf.1, uc327nrf.2
UCSC ID: ENST00000611957.5_13
RefSeq Accession: NM_001366244.2

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.