Human Gene GPR82 (ENST00000302548.5_4) from GENCODE V47lift37
  Description: G protein-coupled receptor 82 (from RefSeq NM_080817.5)
Gencode Transcript: ENST00000302548.5_4
Gencode Gene: ENSG00000171657.6_7
Transcript (Including UTRs)
   Position: hg19 chrX:41,583,434-41,589,383 Size: 5,950 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chrX:41,586,280-41,587,290 Size: 1,011 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:41,583,434-41,589,383)mRNA (may differ from genome)Protein (336 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GPR82_HUMAN
DESCRIPTION: RecName: Full=Probable G-protein coupled receptor 82;
FUNCTION: Orphan receptor.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.73 RPKM in Small Intestine - Terminal Ileum
Total median expression: 4.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -28.20214-0.132 Picture PostScript Text
3' UTR -538.802093-0.257 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on Q96P67
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity

Biological Process:
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC070180 - Homo sapiens G protein-coupled receptor 82, mRNA (cDNA clone MGC:88161 IMAGE:30351329), complete cds.
AK313702 - Homo sapiens cDNA, FLJ94295, Homo sapiens G protein-coupled receptor 82 (GPR82), mRNA.
AL832460 - Homo sapiens mRNA; cDNA DKFZp313N2416 (from clone DKFZp313N2416).
AK122626 - Homo sapiens cDNA FLJ16047 fis, clone D3OST2002648, highly similar to Probable G-protein coupled receptor 82.
AJ319076 - Homo sapiens mRNA for nucleotide-/nucleoside receptor (P(2Y)34 gene).
AB464548 - Synthetic construct DNA, clone: pF1KB8798, Homo sapiens GPR82 gene for G protein-coupled receptor 82, without stop codon, in Flexi system.
CU687064 - Synthetic construct Homo sapiens gateway clone IMAGE:100023145 5' read GPR82 mRNA.
JD451219 - Sequence 432243 from Patent EP1572962.
JD098870 - Sequence 79894 from Patent EP1572962.
JD376139 - Sequence 357163 from Patent EP1572962.
JD454132 - Sequence 435156 from Patent EP1572962.
JD376140 - Sequence 357164 from Patent EP1572962.
JD404892 - Sequence 385916 from Patent EP1572962.
JD498027 - Sequence 479051 from Patent EP1572962.
JD498026 - Sequence 479050 from Patent EP1572962.
JD543964 - Sequence 524988 from Patent EP1572962.
JD543965 - Sequence 524989 from Patent EP1572962.
JD543966 - Sequence 524990 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000302548.1, ENST00000302548.2, ENST00000302548.3, ENST00000302548.4, GPR82_HUMAN, NM_080817, Q5VT13, Q96P67, uc317nbp.1, uc317nbp.2
UCSC ID: ENST00000302548.5_4
RefSeq Accession: NM_080817.5
Protein: Q96P67 (aka GPR82_HUMAN or GP82_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.