Human Gene GPRASP1 (ENST00000537097.2_4) from GENCODE V47lift37
  Description: G protein-coupled receptor associated sorting protein 1, transcript variant 4 (from RefSeq NM_001184727.2)
Gencode Transcript: ENST00000537097.2_4
Gencode Gene: ENSG00000198932.13_9
Transcript (Including UTRs)
   Position: hg19 chrX:101,906,411-101,914,011 Size: 7,601 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chrX:101,908,842-101,913,029 Size: 4,188 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:101,906,411-101,914,011)mRNA (may differ from genome)Protein (1395 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GASP1_HUMAN
DESCRIPTION: RecName: Full=G-protein coupled receptor-associated sorting protein 1; Short=GASP-1;
FUNCTION: May modulate lysosomal sorting and functional down- regulation of a variety of G-protein coupled receptors. Targets receptors for degradation in lysosomes.
SUBUNIT: Interacts with cytoplasmic tails of a variety of G- protein coupled receptors such as D2 dopamine receptor/DRD2 (By similarity), delta opioid receptor/OPRD1, beta-2 adrenergic receptor/ADRB2 and D4 dopamine receptor/DRD4. Interacts with PER1.
INTERACTION: P41143:OPRD1; NbExp=2; IntAct=EBI-2514717, EBI-2624456;
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Expressed in the brain, with lower expression in medulla, spinal cord and substantia nigra.
SIMILARITY: Belongs to the GPRASP family.
SEQUENCE CAUTION: Sequence=BAA23715.3; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 59.69 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 791.50 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -250.40731-0.343 Picture PostScript Text
3' UTR -241.90982-0.246 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR006911 - ARM-rpt_dom
IPR016024 - ARM-type_fold

Pfam Domains:
PF04826 - Armadillo-like

SCOP Domains:
48371 - ARM repeat

ModBase Predicted Comparative 3D Structure on Q5JY77
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0008333 endosome to lysosome transport
GO:1990172 G-protein coupled receptor catabolic process

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  JD382561 - Sequence 363585 from Patent EP1572962.
JD502788 - Sequence 483812 from Patent EP1572962.
JD045197 - Sequence 26221 from Patent EP1572962.
JD328525 - Sequence 309549 from Patent EP1572962.
BC114552 - Homo sapiens G protein-coupled receptor associated sorting protein 1, mRNA (cDNA clone MGC:133275 IMAGE:40037190), complete cds.
JD263789 - Sequence 244813 from Patent EP1572962.
JD353342 - Sequence 334366 from Patent EP1572962.
JD174430 - Sequence 155454 from Patent EP1572962.
JD266230 - Sequence 247254 from Patent EP1572962.
AB007903 - Homo sapiens KIAA0443 mRNA.
JD325511 - Sequence 306535 from Patent EP1572962.
AB385336 - Synthetic construct DNA, clone: pF1KA0443, Homo sapiens GPRASP1 gene for G-protein coupled receptor-associated sorting protein 1, complete cds, without stop codon, in Flexi system.
AY044233 - Homo sapiens clone Xh124d3 unknown mRNA sequence.
JD465851 - Sequence 446875 from Patent EP1572962.
JD262374 - Sequence 243398 from Patent EP1572962.
JD116071 - Sequence 97095 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000537097.1, GASP, GASP1_HUMAN, KIAA0443, NM_001184727, O43168, Q5JY77, Q96LA1, uc324pii.1, uc324pii.2
UCSC ID: ENST00000537097.2_4
RefSeq Accession: NM_001184727.2
Protein: Q5JY77 (aka GASP1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.