Human Gene GPS1 (ENST00000578552.6_6) from GENCODE V47lift37
  Description: G protein pathway suppressor 1, transcript variant 26 (from RefSeq NM_001394775.1)
Gencode Transcript: ENST00000578552.6_6
Gencode Gene: ENSG00000169727.14_18
Transcript (Including UTRs)
   Position: hg19 chr17:80,009,774-80,015,346 Size: 5,573 Total Exon Count: 13 Strand: +
Coding Region
   Position: hg19 chr17:80,009,808-80,015,003 Size: 5,196 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:80,009,774-80,015,346)mRNA (may differ from genome)Protein (487 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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-  Comments and Description Text from UniProtKB
  ID: CSN1_HUMAN
DESCRIPTION: RecName: Full=COP9 signalosome complex subunit 1; Short=SGN1; Short=Signalosome subunit 1; AltName: Full=G protein pathway suppressor 1; Short=GPS-1; AltName: Full=JAB1-containing signalosome subunit 1; AltName: Full=Protein MFH;
FUNCTION: Essential component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN- dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Suppresses G-protein- and mitogen-activated protein kinase-mediated signal transduction.
SUBUNIT: Component of the CSN complex, composed of COPS1/GPS1, COPS2, COPS3, COPS4, COPS5, COP6, COPS7 (COPS7A or COPS7B) and COPS8. In the complex, it probably interacts directly with COPS2, COPS3, COPS4 and CSN5. Interacts directly with inositol kinase ITPK1. Interacts with CAPN8 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
TISSUE SPECIFICITY: Widely expressed.
DOMAIN: The PCI domain is necessary and sufficient for the interactions with other CSN subunits of the complex. Mediates the interaction with CAPN8 (By similarity).
DOMAIN: The N-terminal part (1-216), which is not required for deneddylating activity and CSN complex formation, is nevertheless essential for other aspects of CSN complex function, such as repression of c-fos/FOS expression.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Belongs to the CSN1 family.
SIMILARITY: Contains 1 PCI domain.
SEQUENCE CAUTION: Sequence=AAC50906.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 54.74 RPKM in Testis
Total median expression: 1647.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.8034-0.376 Picture PostScript Text
3' UTR -162.80343-0.475 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019585 - 26S_proteasome_reg_su-Rpn7
IPR000717 - PCI_dom
IPR011990 - TPR-like_helical
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF01399 - PCI domain
PF10602 - 26S proteasome subunit RPN7

SCOP Domains:
48452 - TPR-like
46785 - "Winged helix" DNA-binding domain

ModBase Predicted Comparative 3D Structure on Q13098
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005095 GTPase inhibitor activity
GO:0005515 protein binding

Biological Process:
GO:0000188 inactivation of MAPK activity
GO:0000338 protein deneddylation
GO:0000715 nucleotide-excision repair, DNA damage recognition
GO:0006283 transcription-coupled nucleotide-excision repair
GO:0007254 JNK cascade
GO:0034260 negative regulation of GTPase activity
GO:0043687 post-translational protein modification

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0008180 COP9 signalosome


-  Descriptions from all associated GenBank mRNAs
  LF209450 - JP 2014500723-A/16953: Polycomb-Associated Non-Coding RNAs.
U20285 - Human Gps1 (GPS1) mRNA, complete cds.
AK222508 - Homo sapiens mRNA, G protein pathway suppressor 1 isoform 2 variant, clone: adKA03519.
AK093283 - Homo sapiens cDNA FLJ35964 fis, clone TESTI2012592, highly similar to G PROTEIN PATHWAY SUPPRESSOR 1.
AX748031 - Sequence 1556 from Patent EP1308459.
AK026610 - Homo sapiens cDNA: FLJ22957 fis, clone KAT09963, highly similar to HSU20285 Human Gps1 (GPS1) mRNA.
AK225248 - Homo sapiens mRNA for G protein pathway suppressor 1 isoform 2 variant, clone: DMC00580.
BC000155 - Homo sapiens G protein pathway suppressor 1, mRNA (cDNA clone MGC:5330 IMAGE:2900944), complete cds.
AK297872 - Homo sapiens cDNA FLJ55804 complete cds, highly similar to COP9 signalosome complex subunit 1.
EU832397 - Synthetic construct Homo sapiens clone HAIB:100067426; DKFZo004D0628 G protein pathway suppressor 1 protein (GPS1) gene, encodes complete protein.
EU832312 - Synthetic construct Homo sapiens clone HAIB:100067341; DKFZo008D0627 G protein pathway suppressor 1 protein (GPS1) gene, encodes complete protein.
BC064503 - Homo sapiens G protein pathway suppressor 1, mRNA (cDNA clone MGC:71287 IMAGE:6572943), complete cds.
AK289435 - Homo sapiens cDNA FLJ75157 complete cds, highly similar to Homo sapiens G protein pathway suppressor 1, transcript variant 1, mRNA.
HQ258557 - Synthetic construct Homo sapiens clone IMAGE:100073060 G protein pathway suppressor 1 (GPS1), transcript variant 1 (GPS1) gene, encodes complete protein.
KJ891289 - Synthetic construct Homo sapiens clone ccsbBroadEn_00683 GPS1 gene, encodes complete protein.
AB209596 - Homo sapiens mRNA for G protein pathway suppressor 1 isoform 2 variant protein.
BT009834 - Homo sapiens G protein pathway suppressor 1 mRNA, complete cds.
JD090571 - Sequence 71595 from Patent EP1572962.
JD321774 - Sequence 302798 from Patent EP1572962.
JD152045 - Sequence 133069 from Patent EP1572962.
JD484816 - Sequence 465840 from Patent EP1572962.
JD189388 - Sequence 170412 from Patent EP1572962.
JD393449 - Sequence 374473 from Patent EP1572962.
JD151614 - Sequence 132638 from Patent EP1572962.
JD362758 - Sequence 343782 from Patent EP1572962.
MA445027 - JP 2018138019-A/16953: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q13098 (Reactome details) participates in the following event(s):

R-HSA-8863721 NEDD8-STON binds TOR1 hexamer and COP9 complex
R-HSA-5691006 XPC:RAD23:CETN2 and UV-DDB bind distorted dsDNA site
R-HSA-6781833 ERCC8 (CSA) binds stalled RNA Pol II
R-HSA-8956040 COP9 signalosome deneddylates cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-8956045 COP9 signalosome deneddylates nuclear CRL4 E3 ubiquitin ligase complex
R-HSA-8856825 Cargo recognition for clathrin-mediated endocytosis
R-HSA-5696394 DNA Damage Recognition in GG-NER
R-HSA-6781823 Formation of TC-NER Pre-Incision Complex
R-HSA-8856828 Clathrin-mediated endocytosis
R-HSA-8951664 Neddylation
R-HSA-5696399 Global Genome Nucleotide Excision Repair (GG-NER)
R-HSA-6781827 Transcription-Coupled Nucleotide Excision Repair (TC-NER)
R-HSA-199991 Membrane Trafficking
R-HSA-597592 Post-translational protein modification
R-HSA-5696398 Nucleotide Excision Repair
R-HSA-5653656 Vesicle-mediated transport
R-HSA-392499 Metabolism of proteins
R-HSA-73894 DNA Repair

-  Other Names for This Gene
  Alternate Gene Symbols: COPS1, CSN1, CSN1_HUMAN, ENST00000578552.1, ENST00000578552.2, ENST00000578552.3, ENST00000578552.4, ENST00000578552.5, NM_001394775, Q13098, Q8NA10, Q9BWL1, uc326goj.1, uc326goj.2
UCSC ID: ENST00000578552.6_6
RefSeq Accession: NM_001321092.3
Protein: Q13098 (aka CSN1_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.